Files in MineICA
Analysis of an ICA decomposition obtained on genomics data
NAMESPACE
DESCRIPTION
build/vignette.rds
data/icaSetCarbayo.rda
R/functions_comp2annottests.R
R/heatmap.plus.R
R/functions_comp2annot.R
R/heatmapsOnSel.R
R/methods-IcaSet.R
R/methods-MineICAParams.R
R/functions_enrich.R
R/AllClasses.R
R/compareAnalysis.R
R/runAn.R
R/AllGeneric.R
R/functions.R
R/compareGenes.R
vignettes/MineICA.Rnw
vignettes/bibli.bib
vignettes/images/graphBreast.jpg
vignettes/images/erhist.png
vignettes/images/2_withDendro_zval3.pdf
vignettes/images/2_orderedByContrib_zval3.pdf
man/writeHtmlResTestsByAnnot.Rd
man/A.Rd
man/plotPosOneAnnotInComp_ggplot.Rd
man/Alist.Rd
man/nodeAttrs.Rd
man/selectWitnessGenes.Rd
man/clusVarAnalysis.Rd
man/mergeGostatsResults.Rd
man/runAn.Rd
man/addGenesToGoReport.Rd
man/indComp.Rd
man/dataCarbayo.Rd
man/quantVarAnalysis.Rd
man/correl2Comp.Rd
man/dat.Rd
man/selectContrib.Rd
man/annotFeaturesWithBiomaRt.Rd
man/runEnrich.Rd
man/buildIcaSet.Rd
man/plotCorGraph.Rd
man/writeGostatsHtmltable.Rd
man/icaSetKim.Rd
man/writeGenes.Rd
man/selectFeatures_IQR.Rd
man/runICA.Rd
man/annotFeaturesComp.Rd
man/doEnrichment.Rd
man/getProj.Rd
man/clusterFastICARuns.Rd
man/getComp.Rd
man/getSdExpr.Rd
man/annotCarbayo.Rd
man/plotPosOneAnnotLevInComp_ggplot.Rd
man/plotDensOneAnnotInAllComp.Rd
man/relativePath.Rd
man/wilcoxOrKruskalOnA.Rd
man/qualVarAnalysis.Rd
man/icaSetStransky.Rd
man/build_sortHeatmap.Rd
man/class-MineICAParams.Rd
man/nbOccInComp_simple.Rd
man/nbOccInComp.Rd
man/plotMix.Rd
man/plotMclust.Rd
man/compareAn2graphfile.Rd
man/cor2An.Rd
man/icaSetRiester.Rd
man/clusterSamplesByComp_multiple.Rd
man/icaSetCarbayo.Rd
man/class-IcaSet.Rd
man/buildMineICAParams.Rd
man/writeProjByComp.Rd
man/Slist.Rd
man/plotAllMix.Rd
man/compareAn.Rd
man/hypergeoAn.Rd
man/readA.Rd
man/readS.Rd
man/plotPosAnnotInComp.Rd
man/annotFeatures.Rd
man/clusterSamplesByComp.Rd
man/plot_heatmapsOnSel.Rd
man/compareGenes.Rd
man/plotDensAllAnnotInAllComp.Rd
man/plotDens2classInComp_plotOnly.Rd
man/hgOver.Rd
man/annot2Color.Rd
man/writeRnkFiles.Rd
man/nbOccByGeneInComp.Rd
man/annotReciprocal.Rd
man/runCompareIcaSets.Rd
man/annotInGene.Rd
man/plotPosSamplesInComp.Rd
inst/doc/MineICA.Rnw
inst/doc/MineICA.R
inst/doc/MineICA.pdf
