icaSetCarbayo: IcaSet-object containing a FastICA decomposition of gene...

In MineICA: Analysis of an ICA decomposition obtained on genomics data

Description

Object of class IcaSet containing an ICA decomposition calculated by the FastICA algorithm (through matlab function "icasso") on bladder cancer expression data measured on HG-U133A Affymetrix microarrays. The original expression data were normalized with MAS5 by the authors of the paper followed by log2-transformation. ICA was run on the dataset restricted to the 10000 most variable probe sets (based on IQR values). 10 components were computed. Only probe sets/genes having an absolute projection higher than 3 are stored in this object.

Author(s)

Anne Biton

References

http://jco.ascopubs.org/content/24/5/778/suppl/DC1

MineICA documentation built on Nov. 8, 2020, 5:35 p.m.