doEnrichment: Runs enrichment analysis of contributing genes
In MineICA: Analysis of an ICA decomposition obtained on genomics data

Description Usage Arguments Value Author(s)

doEnrichment This internal function is called by hypergeoAn and runs hypergeometric tests through function hyperGTest to associate the contributing genes of a component to gene sets.

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  doEnrichment(compSel, chip, onto, hgCutoff, cond,
    universe, path, db, pack.annot.EID, Slist, it, cutoff,
    entrez2symbol)

`compSel`	A list containing three elements compSel the projection values of contributing genes that were selected based on their absolute projection compSel_neg the projection values of contributing genes that have negative projections compSel_pos the projection values of contributing genes that have positive projections
`chip`	The annotation package
`onto`	A string specifying the GO ontology to use. Must be one of 'BP', 'CC', or 'MF', see `GOHyperGParams`. Only used when argument `db` is 'GO'.
`hgCutoff`	The p-value threshold
`cond`	A logical indicating whether the calculation should conditioned on the GO structure, see `GOHyperGParams`.
`universe`	The universe for the hypergeometric tests, see `GOHyperGParams`.
`path`	The path where results will be saved
`db`	The used database to use ('GO' or 'KEGG')
`pack.annot.EID`	The name of the environment of the annotation package containing the annotation for Entrez Gene.
`Slist`	The list of gene projections across all components
`it`	The index of the component
`cutoff`	The threshold applied on the gene projections, used to select the contributing genes
`entrez2symbol`	A vector of all gene Symbols involved in the analysis indexed by their Entrez Gene IDs. It is only used when `annotation(params)` is empty, and allows to associate gene sets to Symbols.