Mirsynergy: Mirsynergy

Share:

Detect synergistic miRNA regulatory modules by overlapping neighbourhood expansion.

Author
Yue Li
Date of publication
None
Maintainer
Yue Li <yueli@cs.toronto.edu>
License
GPL-2
Version
1.10.0
URLs

View on Bioconductor

Man pages

mirsynergy
Detect synergistic miRNA regulatory modules by overlapping...
Mirsynergy-package
Mirsynergy: detect synergistic miRNA regulatory modules by...
plot_modules
Plot module assignments.
plot_module_summary
Plot module statistics
print_modules2
Print basic information of the formed modules
summary_modules
Return summary information of the formed modules
tabular_module
Generate tabulated module assignments and nodes for input to...
tcga_brca_testdata
Breast cancer expression test data from TCGA
toy_modules
Test data of 20 mRNA and 20 miRNA.

Files in this package

Mirsynergy/DESCRIPTION
Mirsynergy/NAMESPACE
Mirsynergy/R
Mirsynergy/R/gencluster.R
Mirsynergy/R/mirsynergy.R
Mirsynergy/R/mirsynergy_utils.R
Mirsynergy/build
Mirsynergy/build/vignette.rds
Mirsynergy/inst
Mirsynergy/inst/CITATION
Mirsynergy/inst/NEWS
Mirsynergy/inst/doc
Mirsynergy/inst/doc/Mirsynergy.R
Mirsynergy/inst/doc/Mirsynergy.Rnw
Mirsynergy/inst/doc/Mirsynergy.pdf
Mirsynergy/inst/extdata
Mirsynergy/inst/extdata/tcga_brca_testdata.RData
Mirsynergy/inst/extdata/toy_modules.RData
Mirsynergy/inst/unitTests
Mirsynergy/inst/unitTests/test_mirsynergy.R
Mirsynergy/man
Mirsynergy/man/Mirsynergy-package.Rd
Mirsynergy/man/mirsynergy.Rd
Mirsynergy/man/plot_module_summary.Rd
Mirsynergy/man/plot_modules.Rd
Mirsynergy/man/print_modules2.Rd
Mirsynergy/man/summary_modules.Rd
Mirsynergy/man/tabular_module.Rd
Mirsynergy/man/tcga_brca_testdata.Rd
Mirsynergy/man/toy_modules.Rd
Mirsynergy/tests
Mirsynergy/tests/runTests.R
Mirsynergy/vignettes
Mirsynergy/vignettes/Mirsynergy.Rnw
Mirsynergy/vignettes/Mirsynergy.bib