plot_modules: Plot module assignments.
In Mirsynergy: Mirsynergy
Description
Usage
Arguments
Details
Note
Author(s)
Examples
View source: R/mirsynergy_utils.R
Description
Plot as network graphical view of the output from mirsynergy
V. NB: small network only.
Usage
1
plot_modules(V, W, H, legend.pos = "topright", ...)
Arguments
V
Outputs from mirsynergy
W
An N by M edge weight matrix containing interaction strength between N mRNA and
M miRNA.
H
An N by N edge weight matrix containing the binary interaction among the N mRNA
(genes).
legend.pos
Specify legend position
...
Other parameters passed to plot
Details
Each node will be coloured by the modules they belong to. If a node belongs to
multiple modules, it will be coloured differently based on the exact combination
of the module indexes. The legend displays the corresponding colours and module
assignments.
Note
Only for small network. For large network please use
tabular_module to create a pairwise table as input to Cytoscape.
Author(s)
Yue Li
Examples
1
2
3
load(system.file("extdata/toy_modules.RData", package="Mirsynergy"))
plot_modules(V,W,H)
Mirsynergy documentation built on April 28, 2020, 6:09 p.m.
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Description Usage Arguments Details Note Author(s) Examples
View source: R/mirsynergy_utils.R
Description
Plot as network graphical view of the output from mirsynergy
V. NB: small network only.
Usage
1 | plot_modules(V, W, H, legend.pos = "topright", ...)
|
Arguments
V |
Outputs from |
W |
An N by M edge weight matrix containing interaction strength between N mRNA and M miRNA. |
H |
An N by N edge weight matrix containing the binary interaction among the N mRNA (genes). |
legend.pos |
Specify legend position |
... |
Other parameters passed to |
Details
Each node will be coloured by the modules they belong to. If a node belongs to multiple modules, it will be coloured differently based on the exact combination of the module indexes. The legend displays the corresponding colours and module assignments.
Note
Only for small network. For large network please use
tabular_module to create a pairwise table as input to Cytoscape.
Author(s)
Yue Li
Examples
1 2 3 | load(system.file("extdata/toy_modules.RData", package="Mirsynergy"))
plot_modules(V,W,H)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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