tabular_module: Generate tabulated module assignments and nodes for input to...
In Mirsynergy: Mirsynergy
Description
Usage
Arguments
Value
Author(s)
Examples
View source: R/mirsynergy_utils.R
Description
Generate tabulated module assignments and nodes for input to Cystoscape.
Usage
1
tabular_module(V, W, H, outdir)
Arguments
V
Output from mirsynergy.
W
An N by M edge weight matrix containing interaction strength between N mRNA and
M miRNA.
H
An N by N edge weight matrix containing the binary interaction among the N mRNA
(genes).
outdir
Path to save the nodes and edges files.
Value
nodes
data.frame containing edges in each indexed module. Each edge (row)
contain the edge weights, the edge type (MMI or GGI), and which module they
belong to.
edges
data.frame containing nodes in each indexed module. Each node (row)
contain the node name, type (mRNA/miRNA), and which module they belong to.
Author(s)
Yue Li
Examples
1
2
3
load(system.file("extdata/toy_modules.RData", package="Mirsynergy"))
tabular_module(V,W,H)
Mirsynergy documentation built on April 28, 2020, 6:09 p.m.
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Description Usage Arguments Value Author(s) Examples
View source: R/mirsynergy_utils.R
Description
Generate tabulated module assignments and nodes for input to Cystoscape.
Usage
1 | tabular_module(V, W, H, outdir)
|
Arguments
V |
Output from |
W |
An N by M edge weight matrix containing interaction strength between N mRNA and M miRNA. |
H |
An N by N edge weight matrix containing the binary interaction among the N mRNA (genes). |
outdir |
Path to save the nodes and edges files. |
Value
nodes |
data.frame containing edges in each indexed module. Each edge (row) contain the edge weights, the edge type (MMI or GGI), and which module they belong to. |
edges |
data.frame containing nodes in each indexed module. Each node (row) contain the node name, type (mRNA/miRNA), and which module they belong to. |
Author(s)
Yue Li
Examples
1 2 3 | load(system.file("extdata/toy_modules.RData", package="Mirsynergy"))
tabular_module(V,W,H)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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