NanoStringDiff: Differential Expression Analysis of NanoString nCounter Data

This Package utilizes a generalized linear model(GLM) of the negative binomial family to characterize count data and allows for multi-factor design. NanoStrongDiff incorporate size factors, calculated from positive controls and housekeeping controls, and background level, obtained from negative controls, in the model framework so that all the normalization information provided by NanoString nCounter Analyzer is fully utilized.

Authorhong wang <hong.wang@uky.edu>, chi wang <chi.wang@uky.edu>
Date of publicationNone
Maintainerhong wang <hong.wang@uky.edu>
LicenseGPL
Version1.4.0

View on Bioconductor

Files in this package

NanoStringDiff/DESCRIPTION
NanoStringDiff/NAMESPACE
NanoStringDiff/R
NanoStringDiff/R/AllClass.R NanoStringDiff/R/estNormalizationFactors.R NanoStringDiff/R/glm_LRT.R NanoStringDiff/R/util.R
NanoStringDiff/build
NanoStringDiff/build/vignette.rds
NanoStringDiff/data
NanoStringDiff/data/NanoStringData.rda
NanoStringDiff/inst
NanoStringDiff/inst/NEWS
NanoStringDiff/inst/doc
NanoStringDiff/inst/doc/NanoStringDiff.R
NanoStringDiff/inst/doc/NanoStringDiff.Rnw
NanoStringDiff/inst/doc/NanoStringDiff.pdf
NanoStringDiff/inst/extdata
NanoStringDiff/inst/extdata/Mori.csv
NanoStringDiff/man
NanoStringDiff/man/NanoStringData.Rd NanoStringDiff/man/NanoStringDiff-class.Rd NanoStringDiff/man/NanoStringDiff-package.Rd NanoStringDiff/man/estNormalizationFactors.Rd NanoStringDiff/man/glm.LRT.Rd NanoStringDiff/man/housekeepingControl.Rd NanoStringDiff/man/housekeepingFactor.Rd NanoStringDiff/man/negativeControl.Rd NanoStringDiff/man/negativeFactor.Rd NanoStringDiff/man/positiveControl.Rd NanoStringDiff/man/positiveFactor.Rd
NanoStringDiff/tests
NanoStringDiff/tests/testthat
NanoStringDiff/tests/testthat.R
NanoStringDiff/tests/testthat/test_createNanoStringSet.R
NanoStringDiff/tests/testthat/test_estNormalizationFactors.R
NanoStringDiff/tests/testthat/test_glmLRT.R
NanoStringDiff/vignettes
NanoStringDiff/vignettes/Bioconductor.sty
NanoStringDiff/vignettes/NanoStringDiff.Rnw
NanoStringDiff/vignettes/example.PNG
NanoStringDiff/vignettes/reference.bib
NanoStringDiff/vignettes/unsrturl.bst

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