NanoStringData: A real 'NanoStringSet' object.

In NanoStringDiff: Differential Expression Analysis of NanoString nCounter Data

Description

The object is created based on Mori Data with normal and tumor groups and 2 samples in each group. The object contain 599 endogenes, 6 pisitive control, 6 negative control and 4 housekeeping control.

Usage

data(NanoStringData)

Value

An object of NanoStringSet

Examples

data(NanoStringData)
NanoStringData

Example output

Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colMeans, colSums, colnames, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int,
    pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply,
    setdiff, sort, table, tapply, union, unique, unsplit, which,
    which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

NanoStringSet (storageMode: lockedEnvironment)
assayData: 599 features, 4 samples 
  element names: exprs 
protocolData: none
phenoData
  sampleNames: Normal.1 Normal.2 Tumor.1 Tumor.2
  varLabels: group
  varMetadata: labelDescription
featureData: none
experimentData: use 'experimentData(object)'
Annotation:  

NanoStringDiff documentation built on Nov. 8, 2020, 7:56 p.m.