NetPathMiner is a general framework for network path mining using genome-scale networks. It constructs networks from KGML, SBML and BioPAX files, providing three network representations, metabolic, reaction and gene representations. NetPathMiner finds active paths and applies machine learning methods to summarize found paths for easy interpretation. It also provides static and interactive visualizations of networks and paths to aid manual investigation.
|Author||Ahmed Mohamed <[email protected]>, Tim Hancock <[email protected]>, Ichigaku Takigawa <[email protected]>, Nicolas Wicker <[email protected]>|
|Bioconductor views||Classification Clustering GraphAndNetwork Network Pathways|
|Maintainer||Ahmed Mohamed <[email protected]>|
|License||GPL (>= 2)|
|Package repository||View on Bioconductor|
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