inst/unitTests/test_prepare_dataset.R

In OMICsPCA: An R package for quantitative integration and analysis of multiple omics assays from heterogeneous samples

anno <- system.file("extdata/annotation2/TSS_groups.bed",
                    package = "OMICsPCAdata")

list <- system.file("extdata/annotation2/TSS_list",
                    package = "OMICsPCAdata")

fact <- system.file("extdata/factors2/demofactor",
                    package = "OMICsPCAdata")

test_prepare_dataset <- function(){

demo <- prepare_dataset(factdir = fact, annofile = anno,
annolist = list)

}