OTUbase: Provides structure and functions for the analysis of OTU data

Provides a platform for Operational Taxonomic Unit based analysis

AuthorDaniel Beck, Matt Settles, and James A. Foster
Date of publicationNone
MaintainerDaniel Beck <danlbek@gmail.com>
LicenseArtistic-2.0
Version1.24.0

View on Bioconductor

Files in this package

OTUbase/DESCRIPTION
OTUbase/NAMESPACE
OTUbase/R
OTUbase/R/AllClasses.R OTUbase/R/AllGenerics.R OTUbase/R/methods-OTUbase.R OTUbase/R/methods-OTUset.R OTUbase/R/methods-TAXset.R OTUbase/R/utils-general.R OTUbase/R/utils-summary.R OTUbase/R/utils-tax.R OTUbase/R/zzz.R
OTUbase/build
OTUbase/build/vignette.rds
OTUbase/inst
OTUbase/inst/doc
OTUbase/inst/doc/Introduction_to_OTUbase.R
OTUbase/inst/doc/Introduction_to_OTUbase.Rnw
OTUbase/inst/doc/Introduction_to_OTUbase.pdf
OTUbase/inst/extdata
OTUbase/inst/extdata/Sogin_2006
OTUbase/inst/extdata/Sogin_2006/sample_metadata.txt
OTUbase/inst/extdata/Sogin_2006/sogin.fasta
OTUbase/inst/extdata/Sogin_2006/sogin.groups
OTUbase/inst/extdata/Sogin_2006/sogin.names
OTUbase/inst/extdata/Sogin_2006/sogin.rep.fix.tax
OTUbase/inst/extdata/Sogin_2006/sogin.unique.filter.fn.0.03.rep.fasta
OTUbase/inst/extdata/Sogin_2006/sogin.unique.filter.fn.list
OTUbase/inst/extdata/Sogin_2006/sogin.unique.fix.tax
OTUbase/man
OTUbase/man/OTUbase-package.Rd OTUbase/man/OTUset-class.Rd OTUbase/man/TAXset-class.Rd OTUbase/man/abundance.Rd OTUbase/man/accessors.Rd OTUbase/man/assignmentData.Rd OTUbase/man/clusterSamples.Rd OTUbase/man/other_functions.Rd OTUbase/man/other_generics.Rd OTUbase/man/readOTUset.Rd OTUbase/man/readTAXset.Rd OTUbase/man/sampleData.Rd OTUbase/man/subOTUset.Rd OTUbase/man/subTAXset.Rd
OTUbase/vignettes
OTUbase/vignettes/Introduction_to_OTUbase.Rnw

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