OTUbase: Provides structure and functions for the analysis of OTU data

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Provides a platform for Operational Taxonomic Unit based analysis

Author
Daniel Beck, Matt Settles, and James A. Foster
Date of publication
None
Maintainer
Daniel Beck <danlbek@gmail.com>
License
Artistic-2.0
Version
1.24.0

View on Bioconductor

Man pages

abundance
abundance
accessors
Accessor functions for OTUset and TAXset objects
assignmentData
assignmentData
clusterSamples
clusterSamples
other_functions
Other functions
other_generics
Other Generics
OTUbase-package
The OTUbase package: A tool for organizing and manipulating...
OTUset-class
"OTUset" class for OTU data
readOTUset
readOTUset
readTAXset
readTAXset
sampleData
sampleData
subOTUset
subOTUset
subTAXset
subTAXset
TAXset-class
"TAXset" class for TAX data

Files in this package

OTUbase/DESCRIPTION
OTUbase/NAMESPACE
OTUbase/R
OTUbase/R/AllClasses.R
OTUbase/R/AllGenerics.R
OTUbase/R/methods-OTUbase.R
OTUbase/R/methods-OTUset.R
OTUbase/R/methods-TAXset.R
OTUbase/R/utils-general.R
OTUbase/R/utils-summary.R
OTUbase/R/utils-tax.R
OTUbase/R/zzz.R
OTUbase/build
OTUbase/build/vignette.rds
OTUbase/inst
OTUbase/inst/doc
OTUbase/inst/doc/Introduction_to_OTUbase.R
OTUbase/inst/doc/Introduction_to_OTUbase.Rnw
OTUbase/inst/doc/Introduction_to_OTUbase.pdf
OTUbase/inst/extdata
OTUbase/inst/extdata/Sogin_2006
OTUbase/inst/extdata/Sogin_2006/sample_metadata.txt
OTUbase/inst/extdata/Sogin_2006/sogin.fasta
OTUbase/inst/extdata/Sogin_2006/sogin.groups
OTUbase/inst/extdata/Sogin_2006/sogin.names
OTUbase/inst/extdata/Sogin_2006/sogin.rep.fix.tax
OTUbase/inst/extdata/Sogin_2006/sogin.unique.filter.fn.0.03.rep.fasta
OTUbase/inst/extdata/Sogin_2006/sogin.unique.filter.fn.list
OTUbase/inst/extdata/Sogin_2006/sogin.unique.fix.tax
OTUbase/man
OTUbase/man/OTUbase-package.Rd
OTUbase/man/OTUset-class.Rd
OTUbase/man/TAXset-class.Rd
OTUbase/man/abundance.Rd
OTUbase/man/accessors.Rd
OTUbase/man/assignmentData.Rd
OTUbase/man/clusterSamples.Rd
OTUbase/man/other_functions.Rd
OTUbase/man/other_generics.Rd
OTUbase/man/readOTUset.Rd
OTUbase/man/readTAXset.Rd
OTUbase/man/sampleData.Rd
OTUbase/man/subOTUset.Rd
OTUbase/man/subTAXset.Rd
OTUbase/vignettes
OTUbase/vignettes/Introduction_to_OTUbase.Rnw