API for OTUbase
Provides structure and functions for the analysis of OTU data

Global functions
OTUbase Man page
OTUbase-package Man page
OTUset Man page
OTUsetB Man page
OTUsetB-class Man page
OTUsetF Man page
OTUsetF-class Man page
OTUsetQ Man page
OTUsetQ-class Man page
TAXset Man page
TAXsetB Man page
TAXsetB-class Man page
TAXsetF Man page
TAXsetF-class Man page
TAXsetQ Man page
TAXsetQ-class Man page
aData Man page
aData,.OTUbase-method Man page
aData<- Man page
aData<-,.OTUbase,data.frame-method Man page
aData<-,.OTUbase-method Man page
abundance Man page
abundance,.OTUset-method Man page
abundance,.TAXset-method Man page
addUnique Source code
adf_extract Source code
assignmentData Man page
assignmentData,.OTUbase-method Man page
assignmentData<- Man page
assignmentData<-,.OTUbase,AnnotatedDataFrame-method Man page
assignmentData<-,.OTUbase-method Man page
assignmentLabels Man page
assignmentLabels,.OTUbase-method Man page
assignmentLabels<- Man page
assignmentLabels<-,.OTUbase,character-method Man page
assignmentLabels<-,.OTUbase-method Man page
assignmentNames Man page
assignmentNames,.OTUbase-method Man page
clusterSamples Man page
clusterSamples,.OTUset-method Man page
clusterSamples,.TAXset-method Man page
clusterSamples-generic Man page
clusterSamples-method Man page
dfromblastclustotu Source code
dfromcdhitotu Source code
dfrommothurotu Source code
getBar Source code
getOTUs Man page Source code
getSamples Man page Source code
getseqname Source code
notus Man page
notus,.OTUset-method Man page
nsamples Man page
nsamples,.OTUbase-method Man page
o_diversity Man page Source code
o_estimateR Man page Source code
onAttach Source code
otuID Man page
otuID,.OTUset-method Man page
otuseqplot Man page Source code
otusize Man page Source code
otuspersample Man page Source code
readADF Source code
readOTUset Man page Source code
readRDP Source code
readTAXset Man page Source code
readblastclustotu Source code
readcdhitotu Source code
readmothurotu Source code
readrdpfix Source code
readsample Source code
readunknowntax Source code
rseqplot Man page Source code
sData Man page
sData,.OTUbase-method Man page
sData<- Man page
sData<-,.OTUbase,data.frame-method Man page
sData<-,.OTUbase-method Man page
sampleData Man page
sampleData,.OTUbase-method Man page
sampleData<- Man page
sampleData<-,.OTUbase,AnnotatedDataFrame-method Man page
sampleData<-,.OTUbase-method Man page
sampleID Man page
sampleID,.OTUbase-method Man page
sampleLabels Man page
sampleLabels,.OTUbase-method Man page
sampleLabels<- Man page
sampleLabels<-,.OTUbase,character-method Man page
sampleLabels<-,.OTUbase-method Man page
seqnames Man page
seqnames,.OTUbase-method Man page
seqspersample Man page Source code
sharedotus Man page Source code
subOTUset Man page Source code
subTAXset Man page Source code
tax Man page
tax,.TAXset-method Man page
tax<- Man page
tax<-,.TAXset,data.frame-method Man page
tax<-,.TAXset-method Man page
OTUbase documentation built on Nov. 17, 2017, 1:04 p.m.