Description Slots Methods Examples
This class provides a way to store and manipulate read-classification data. ".TAXset" is inherited by "TAXsetQ", "TAXsetF", and "TAXsetB". The user will want to use "TAXsetQ" when quality data is available, "TAXsetF" when sequence data (without quality data) is available, and "TAXsetB" when only classification and sample data are available.
TAXsetB includes Slots id
, sampleID
, tax
, sampleData
, assignmentData
.
TAXsetF includes Slots id
sampleID
, tax
, sampleData
, assignmentData
, sread
.
TAXsetQ includes Slots id
sampleID
, tax
, sampleData
, assignmentData
, sread
, quality
.
Methods include:
provides access to the id slot of object
provides access to the sampleID slot of object
provides access the tax slot of object
provides accesss the sampleData slot of object
provides access the assignmentData slot of object
provides access to the sread slot of object
provides access to the quality slot of object
returns the first word of the id line. Intended to extract the sequence name from other sequence information.
returns the number of samples in an TAXset object
signature(object=".TAXset")
: provides a brief summary of the object, including its class, number of sequences, and number of samples.
1 2 3 | showClass(".TAXset")
showMethods(class=".TAXset")
showClass("TAXsetQ")
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.