API for OTUbase
Provides structure and functions for the analysis of OTU data
| Global functions | |
|---|---|
| .addUnique | Source code |
| .adf_extract | Source code |
| .getBar | Source code |
| .getseqname | Source code |
| .idfromblastclustotu | Source code |
| .idfromcdhitotu | Source code |
| .idfrommothurotu | Source code |
| .onAttach | Source code |
| .readADF | Source code |
| .readRDP | Source code |
| .readblastclustotu | Source code |
| .readcdhitotu | Source code |
| .readmothurotu | Source code |
| .readrdpfix | Source code |
| .readsample | Source code |
| .readunknowntax | Source code |
| OTUbase | Man page |
| OTUbase-package | Man page |
| OTUset | Man page |
| OTUsetB | Man page |
| OTUsetB-class | Man page |
| OTUsetF | Man page |
| OTUsetF-class | Man page |
| OTUsetQ | Man page |
| OTUsetQ-class | Man page |
| TAXset | Man page |
| TAXsetB | Man page |
| TAXsetB-class | Man page |
| TAXsetF | Man page |
| TAXsetF-class | Man page |
| TAXsetQ | Man page |
| TAXsetQ-class | Man page |
| aData | Man page |
| aData,.OTUbase-method | Man page |
| aData<- | Man page |
| aData<-,.OTUbase,data.frame-method | Man page |
| aData<-,.OTUbase-method | Man page |
| abundance | Man page |
| abundance,.OTUset-method | Man page |
| abundance,.TAXset-method | Man page |
| assignmentData | Man page |
| assignmentData,.OTUbase-method | Man page |
| assignmentData<- | Man page |
| assignmentData<-,.OTUbase,AnnotatedDataFrame-method | Man page |
| assignmentData<-,.OTUbase-method | Man page |
| assignmentLabels | Man page |
| assignmentLabels,.OTUbase-method | Man page |
| assignmentLabels<- | Man page |
| assignmentLabels<-,.OTUbase,character-method | Man page |
| assignmentLabels<-,.OTUbase-method | Man page |
| assignmentNames | Man page |
| assignmentNames,.OTUbase-method | Man page |
| clusterSamples | Man page |
| clusterSamples,.OTUset-method | Man page |
| clusterSamples,.TAXset-method | Man page |
| clusterSamples-generic | Man page |
| clusterSamples-method | Man page |
| getOTUs | Man page Source code |
| getSamples | Man page Source code |
| notus | Man page |
| notus,.OTUset-method | Man page |
| nsamples | Man page |
| nsamples,.OTUbase-method | Man page |
| o_diversity | Man page Source code |
| o_estimateR | Man page Source code |
| otuID | Man page |
| otuID,.OTUset-method | Man page |
| otuseqplot | Man page Source code |
| otusize | Man page Source code |
| otuspersample | Man page Source code |
| readOTUset | Man page Source code |
| readTAXset | Man page Source code |
| rseqplot | Man page Source code |
| sData | Man page |
| sData,.OTUbase-method | Man page |
| sData<- | Man page |
| sData<-,.OTUbase,data.frame-method | Man page |
| sData<-,.OTUbase-method | Man page |
| sampleData | Man page |
| sampleData,.OTUbase-method | Man page |
| sampleData<- | Man page |
| sampleData<-,.OTUbase,AnnotatedDataFrame-method | Man page |
| sampleData<-,.OTUbase-method | Man page |
| sampleID | Man page |
| sampleID,.OTUbase-method | Man page |
| sampleLabels | Man page |
| sampleLabels,.OTUbase-method | Man page |
| sampleLabels<- | Man page |
| sampleLabels<-,.OTUbase,character-method | Man page |
| sampleLabels<-,.OTUbase-method | Man page |
| seqnames | Man page |
| seqnames,.OTUbase-method | Man page |
| seqspersample | Man page Source code |
| sharedotus | Man page Source code |
| subOTUset | Man page Source code |
| subTAXset | Man page Source code |
| tax | Man page |
| tax,.TAXset-method | Man page |
| tax<- | Man page |
| tax<-,.TAXset,data.frame-method | Man page |
| tax<-,.TAXset-method | Man page |
