Man pages for OncoSimulR
Forward Genetic Simulation of Cancer Progression with Epistasis
| allFitnessEffects | Create fitness and mutation effects specification from... |
| benchmarks | Summary results from some benchmarks reported in the... |
| evalAllGenotypes | Evaluate fitness/mutator effects of one or all possible... |
| example-missing-drivers | An example where there are intermediate missing drivers. |
| examplePosets | Example posets |
| examplesFitnessEffects | Examples of fitness effects |
| mcfLs | mcfLs simulation from the vignette |
| oncoSimulIndiv | Simulate tumor progression for one or more individuals,... |
| OncoSimulWide2Long | Convert the 'pops.by.time' component of an 'oncosimul' object... |
| plotClonePhylog | Plot a parent-child relationship of the clones. |
| plot.fitnessEffects | Plot fitnessEffects objects. |
| plotFitnessLandscape | Plot a fitness landscape. |
| plot.oncosimul | Plot simulated tumor progression data. |
| plotPoset | Plot a poset. |
| POM | Obtain Lines of Descent and Paths of the Maximum and their... |
| poset | Poset |
| rfitness | Generate random fitness. |
| samplePop | Obtain a sample from a population of simulations. |
| simOGraph | Simulate oncogenetic/CBN/XMPN DAGs. |
| to_Magellan | Create output for MAGELLAN and obtain MAGELLAN statistics. |
