examplesFitnessEffects: Examples of fitness effects

In OncoSimulR: Forward Genetic Simulation of Cancer Progression with Epistasis

Description

Some examples fitnessEffects objects. This is a collection, in a list, of most of the fitnessEffects created (using allFitnessEffects) for the vignette. See the vignette for descriptions and references.

Usage

data("examplesFitnessEffects")

Format

The format is a list of fitnessEffects objects.

See Also

allFitnessEffects

Examples

data(examplesFitnessEffects)

plot(examplesFitnessEffects[["fea"]])

evalAllGenotypes(examplesFitnessEffects[["cbn1"]], order = FALSE)

Example output

           Genotype  Fitness
1                 a 1.100000
2                 b 1.100000
3                 c 0.100000
4                 d 1.100000
5                 e 1.100000
6                 g 0.100000
7              a, b 1.210000
8              a, c 0.110000
9              a, d 1.210000
10             a, e 1.210000
11             a, g 0.110000
12             b, c 0.110000
13             b, d 1.210000
14             b, e 1.210000
15             b, g 0.110000
16             c, d 0.110000
17             c, e 0.110000
18             c, g 0.010000
19             d, e 1.210000
20             d, g 0.110000
21             e, g 0.110000
22          a, b, c 1.331000
23          a, b, d 1.331000
24          a, b, e 1.331000
25          a, b, g 0.121000
26          a, c, d 0.121000
27          a, c, e 0.121000
28          a, c, g 0.011000
29          a, d, e 1.331000
30          a, d, g 0.121000
31          a, e, g 0.121000
32          b, c, d 0.121000
33          b, c, e 0.121000
34          b, c, g 0.011000
35          b, d, e 1.331000
36          b, d, g 0.121000
37          b, e, g 0.121000
38          c, d, e 0.121000
39          c, d, g 0.011000
40          c, e, g 0.011000
41          d, e, g 0.121000
42       a, b, c, d 1.464100
43       a, b, c, e 1.464100
44       a, b, c, g 0.133100
45       a, b, d, e 1.464100
46       a, b, d, g 0.133100
47       a, b, e, g 0.133100
48       a, c, d, e 0.133100
49       a, c, d, g 0.012100
50       a, c, e, g 0.012100
51       a, d, e, g 0.133100
52       b, c, d, e 0.133100
53       b, c, d, g 0.012100
54       b, c, e, g 0.012100
55       b, d, e, g 0.133100
56       c, d, e, g 0.133100
57    a, b, c, d, e 1.610510
58    a, b, c, d, g 0.146410
59    a, b, c, e, g 0.146410
60    a, b, d, e, g 0.146410
61    a, c, d, e, g 0.146410
62    b, c, d, e, g 0.146410
63 a, b, c, d, e, g 1.771561

OncoSimulR documentation built on Nov. 8, 2020, 8:31 p.m.