OncoSimulWide2Long: Convert the 'pops.by.time' component of an 'oncosimul' object...
In OncoSimulR: Forward Genetic Simulation of Cancer Progression with Epistasis

Description Usage Arguments Value Author(s) See Also Examples

Conver the pops.by.time component from its "wide" format (with one column for time, and as many columns as clones/genotypes) into "long" format, so that it can be used with other functions, for instance for plots.

1	OncoSimulWide2Long(x)

`x`	An object of class `oncosimul` or `oncosimul2`.

A data frame with four columns: Time; Y, the number of cells (the population size); Drivers, a factor with the number of drivers of the given genotype; Genotype, the genotyp.

Ramon Diaz-Uriarte

oncoSimulIndiv

data(examplePosets)
## An object of class oncosimul
p705 <- examplePosets[["p705"]]
p1 <- oncoSimulIndiv(p705)
class(p1)
lp1 <- OncoSimulWide2Long(p1)
head(lp1)
summary(lp1)

## An object of class oncosimul2
data(examplesFitnessEffects)

sm <-  oncoSimulIndiv(examplesFitnessEffects$cbn1,
                       model = "McFL", 
                       mu = 5e-7,
                       detectionSize = 1e8, 
                       detectionDrivers = 2,
                       sampleEvery = 0.025,
                       keepEvery = 5,
                       initSize = 2000,
                       onlyCancer = FALSE)
class(sm)
lsm <- OncoSimulWide2Long(sm)
head(lsm)
summary(lsm)