PAST: Pathway Association Study Tool (PAST)

PAST takes GWAS output and assigns SNPs to genes, uses those genes to find pathways associated with the genes, and plots pathways based on significance. Implements methods for reading GWAS input data, finding genes associated with SNPs, calculating enrichment score and significance of pathways, and plotting pathways.

Package details

AuthorThrash Adam [cre, aut], DeOrnellis Mason [aut]
Bioconductor views GeneSetEnrichment Pathways
MaintainerThrash Adam <>
LicenseGPL (>=3) + file LICENSE
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


Try the PAST package in your browser

Any scripts or data that you put into this service are public.

PAST documentation built on Nov. 8, 2020, 8:31 p.m.