plot_pathways: Plot Rugplots for Selected Pathways

In PAST: Pathway Association Study Tool (PAST)

Description

Plot Rugplots for Selected Pathways

Usage

plot_pathways(
  rugplots_data,
  filter_type,
  filter_parameter,
  mode,
  output_directory
)

Arguments

rugplots_data	The data to be plotted (returned from find_pathway_significance())
filter_type	The parameter to be used for filtering
filter_parameter	The cut-off value of the filtering parameter
mode	The mode used to create the data (increasing/decreasing)
output_directory	An existing directory to save results in

Value

Does not return a value

Examples

example("find_pathway_significance")
plot_pathways(rugplots_data, "pvalue", "0.03", "decreasing", tempdir())

PAST documentation built on Nov. 8, 2020, 8:31 p.m.