load_LD: Load Linkage Disequilibrium

In PAST: Pathway Association Study Tool (PAST)

Description

Load Linkage Disequilibrium

Usage

load_LD(
  LD_file,
  LD_columns = c("Locus1", "Position1", "Site1", "Position2", "Site2", "Dist_bp",
    "R.2")
)

Arguments

LD_file	The file containing linkage disequilibrium data
LD_columns	The names of the columns in your linkage disequilibrium data for the chromosome of the first SNP, the position of the first SNP, the site of the first SNP, the chromosome of the second SNP, the position of the second SNP, the site of the second SNP, the distance between the two SNPs, and the R.2

Value

The linkage disequilibrium data in a list containing dataframes for each chromosome.

Examples

demo_LD_file = system.file("extdata","LD.txt.xz",
  package = "PAST", mustWork = TRUE)
LD <- load_LD(demo_LD_file)

PAST documentation built on Nov. 8, 2020, 8:31 p.m.