PAnnBuilder: Protein annotation data package builder
Version 1.40.0

Processing annotation data from public data repositories and building protein-centric annotation data packages.

AuthorLi Hong lihong@sibs.ac.cn
Bioconductor views Annotation Proteomics
Date of publicationNone
MaintainerLi Hong <sysptm@gmail.com>
LicenseLGPL (>= 2.0)
Version1.40.0
URL http://www.biosino.org/PAnnBuilder
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("PAnnBuilder")

Popular man pages

bfBuilder_DB: Build Data Packages for Body Fluid Proteomes
dNameBuilder_DB: Build Data Packages for Mapping between ID and Name
getSrcUrl: Get the Url and Release information for Diverse Databases
initClasses: Define Class and Object
loadFromUrl: Load Files from a Web Site
makeLLDB: Create a Lazy Loading Database for Package Data Files
pBaseBuilder_DB: Build Data Packages for Primary Protein Database
See all...

All man pages Function index File listing

Man pages

bfBuilder_DB: Build Data Packages for Body Fluid Proteomes
createAnnObjs: Creates the AnnObj instances
crossBuilder_DB: Build Data Packages for Protein ID Mapping
dNameBuilder_DB: Build Data Packages for Mapping between ID and Name
getSrcUrl: Get the Url and Release information for Diverse Databases
GOABuilder_DB: Build Data Packages for Proteomics Gene Ontology
HomoloGeneBuilder_DB: Build Data Packages for Homolog Protein Group
initClasses: Define Class and Object
InParanoidBuilder_DB: Build Data Packages for Ortholog Protein Group
intBuilder_DB: Build Data Package for Interaction
loadFromUrl: Load Files from a Web Site
makeLLDB: Create a Lazy Loading Database for Package Data Files
pBaseBuilder_DB: Build Data Packages for Primary Protein Database
PeptideAtlasBuilder_DB: Build data package for experimentally identified peptides
processData: Convert Data Format
pSeqBuilder_DB: Build Data Packages for Query Sequences
ptmBuilder_DB: Build Data Packages for Protein Post-Translational...
scopBuilder_DB: Build Data Package for Structural Classification of Proteins
subcellBuilder_DB: Build Data Package for Protein Subcellular Location
writeData_DB: Parse and Write Data into R Data Packages
writeManPage: Write Help Documents
zzz: Load packages and data

Functions

.callPerl Man page
.onLoad Man page
.srcUrls Man page
GOABuilder_DB Man page Source code
HomoloGeneBuilder_DB Man page Source code
InParanoidBuilder_DB Man page Source code
PeptideAtlasBuilder_DB Man page Source code
bfBuilder_DB Man page Source code
buildMapCounts Source code
callPerl Source code
copyTemplates Man page Source code
copyTemplates_DB Man page Source code
createAnnObjs Man page Source code
createAnnObjs.BACELLO Source code
createAnnObjs.DBSUBLOC Source code
createAnnObjs.GOA Source code
createAnnObjs.HOMOLOGENE Source code
createAnnObjs.INPARANOID Source code
createAnnObjs.IPI Source code
createAnnObjs.REFSEQ Source code
createAnnObjs.SP Source code
createAnnObjs.SYSBODYFLUID Source code
createAnnObjs.SYSPTM Source code
createEmptyDPkg Man page Source code
createMAPCOUNTS Source code
createSeeds Man page Source code
crossBuilder_DB Man page Source code
dNameBuilder_DB Man page Source code
dbGetTable Source code
dbschema Man page
dbschema,AnnDbObj-method Man page
dbschema,DBIConnection-method Man page
dbschema,environment-method Man page
descriptionInfo Man page
fasta2list Man page Source code
fileMuncher Man page Source code
fileMuncher_DB Man page Source code
get3DIDBuilt Man page Source code
get3DIDUrl Man page Source code
getALLBuilt Man page Source code
getALLUrl Man page Source code
getBACELLOBuilt Man page Source code
getBACELLOUrl Man page Source code
getBaseData Man page Source code
getBaseParsers Man page Source code
getDBSUBLOCBuilt Man page Source code
getDBSUBLOCUrl Man page Source code
getDOMINEBuilt Man page Source code
getDOMINEUrl Man page Source code
getGENEINTBuilt Man page Source code
getGENEINTUrl Man page Source code
getGOABuilt Man page Source code
getGOAUrl Man page Source code
getGONAMEBuilt Source code
getGONAMEUrl Source code
getGOUrl Man page Source code
getHOMOLOGENEBuilt Man page Source code
getHOMOLOGENEUrl Man page Source code
getINPARANOIDBuilt Man page Source code
getINPARANOIDUrl Man page Source code
getINTACTBuilt Man page Source code
getINTACTUrl Man page Source code
getINTERPROBuilt Man page Source code
getINTERPRONAMEBuilt Source code
getINTERPRONAMEUrl Source code
getINTERPROUrl Man page Source code
getIPIBuilt Man page Source code
getIPISQUrl Man page Source code
getIPIUrl Man page Source code
getKEGGNAMEBuilt Source code
getKEGGNAMEUrl Source code
getKEGGUrl Man page
getMPPIBuilt Man page Source code
getMPPIUrl Man page Source code
getNPDUrl Source code
getPEPTIDEATLASBuilt Man page Source code
getPEPTIDEATLASUrl Man page Source code
getPFAMBuilt Man page Source code
getPFAMNAMEBuilt Source code
getPFAMNAMEUrl Source code
getPFAMUrl Man page Source code
getPROSITENAMEBuilt Man page Source code
getPROSITENAMEUrl Man page Source code
getREFSEQBuilt Man page Source code
getREFSEQSQUrl Man page Source code
getREFSEQUrl Man page Source code
getRepList Man page Source code
getRepList_DB Source code
getSCOPBuilt Man page Source code
getSCOPUrl Man page Source code
getSPBuilt Man page Source code
getSPSQUrl Source code
getSPUrl Man page Source code
getSYSBODYFLUIDBuilt Man page Source code
getSYSBODYFLUIDUrl Man page Source code
getSYSPTMBuilt Man page Source code
getSYSPTMUrl Man page Source code
getShortSciName Man page Source code
getSrcBuilt Man page Source code
getSrcObjs Man page Source code
getSrcSQBuilt Man page Source code
getSrcSQUrl Man page Source code
getSrcUrl Man page Source code
getTAXNAMEBuilt Source code
getTAXNAMEUrl Source code
getTREMBLBuilt Man page Source code
getTREMBLSQUrl Source code
getTREMBLUrl Man page Source code
idBlast Man page Source code
index_DB Source code
intBuilder_DB Man page Source code
loadFromUrl Man page Source code
makeLLDB Man page Source code
mergeRowByKey Man page Source code
onLoad Source code
organism2alias Man page Source code
organism2species Man page Source code
organism2taxID Man page Source code
pBase Man page Source code
pBaseBuilder_DB Man page Source code
pSeqBuilder_DB Man page Source code
processData Man page
ptmBuilder_DB Man page Source code
scopBuilder_DB Man page Source code
sourceURLs Man page
speciesNorganism Man page Source code
splitEntry Man page Source code
srcUrls Source code
subcellBuilder_DB Man page Source code
taxID2organism Man page Source code
taxLists Man page
twoStepSplit Man page Source code
unzipFile Man page Source code
validateUrl Man page Source code
write3DIDData_DB Man page Source code
writeBACELLOData_DB Man page Source code
writeDBSUBLOCData_DB Man page Source code
writeDOMINEData_DB Man page Source code
writeData_DB Man page Source code
writeDescription Man page Source code
writeDescription_DB Man page Source code
writeGENEINTData_DB Man page Source code
writeGOAData_DB Man page Source code
writeGOName_DB Man page Source code
writeHomoloGeneData_DB Man page Source code
writeINTACTData_DB Man page Source code
writeINTERPROName_DB Man page Source code
writeIPIData_DB Man page Source code
writeInParanoidData_DB Man page Source code
writeInput Man page Source code
writeInputBLAST Man page Source code
writeInputINTERPRO Man page Source code
writeInputIPI Man page Source code
writeInputPFAM Man page Source code
writeInputREFSEQ Man page Source code
writeInputSP Man page Source code
writeKEGGName_DB Man page Source code
writeMPPIData_DB Man page Source code
writeManAnno Man page Source code
writeManAnno_DB Man page Source code
writeManMerge Man page Source code
writeManSQ Man page Source code
writeMeta_DB Man page Source code
writeName_DB Man page Source code
writeOutput Man page Source code
writePFAMName_DB Man page Source code
writePROSITEName_DB Source code
writePeptideAtlasData_DB Man page Source code
writeREFSEQData_DB Man page Source code
writeSCOPData_DB Man page Source code
writeSPData_DB Man page Source code
writeSYSBODYFLUIDData_DB Man page Source code
writeSYSPTMData_DB Man page Source code
writeTAXName_DB Man page Source code

Files

DESCRIPTION
NAMESPACE
R
R/GOABuilder_DB.R
R/HomoloGeneBuilder_DB.R
R/InParanoidBuilder_DB.R
R/PeptideAtlasBuilder_DB.R
R/bfBuilder_DB.R
R/createAnnObjs.R
R/crossBuilder_DB.R
R/dNameBuilder_DB.R
R/getSrcUrl.R
R/initClasses.R
R/intBuilder_DB.R
R/loadFromUrl.R
R/makeLLDB.R
R/mapCountsBuilder.R
R/pBaseBuilder_DB.R
R/pSeqBuilder_DB.R
R/processData.R
R/ptmBuilder_DB.R
R/scopBuilder_DB.R
R/subcellBuilder_DB.R
R/writeData_DB.R
R/writeManPage.R
R/zzz.R
build
build/vignette.rds
data
data/descriptionInfo.R
data/descriptionInfo.txt
data/sourceURLs.R
data/sourceURLs.txt
data/taxLists.R
data/taxLists.txt
inst
inst/DBschemas
inst/DBschemas/schemas_1.0
inst/DBschemas/schemas_1.0/3DID_DB.sql
inst/DBschemas/schemas_1.0/BACELLO_DB.sql
inst/DBschemas/schemas_1.0/CROSS_DB.sql
inst/DBschemas/schemas_1.0/DBSUBLOC.sql
inst/DBschemas/schemas_1.0/DNAME_DB.sql
inst/DBschemas/schemas_1.0/DOMINE_DB.sql
inst/DBschemas/schemas_1.0/GENEINT_DB.sql
inst/DBschemas/schemas_1.0/GOA_DB.sql
inst/DBschemas/schemas_1.0/HOMOLOGENE_DB.sql
inst/DBschemas/schemas_1.0/INPARANOID_DB.sql
inst/DBschemas/schemas_1.0/INTACT_DB.sql
inst/DBschemas/schemas_1.0/IPI_DB.sql
inst/DBschemas/schemas_1.0/MPPI_DB.sql
inst/DBschemas/schemas_1.0/PEPTIDEALTAS_DB.sql
inst/DBschemas/schemas_1.0/REFSEQ_DB.sql
inst/DBschemas/schemas_1.0/SCOP_DB.sql
inst/DBschemas/schemas_1.0/SP_DB.sql
inst/DBschemas/schemas_1.0/SYSBODYFLUID_DB.sql
inst/DBschemas/schemas_1.0/SYSPTM_DB.sql
inst/doc
inst/doc/PAnnBuilder.R
inst/doc/PAnnBuilder.Rnw
inst/doc/PAnnBuilder.pdf
inst/extdata
inst/extdata/query.example
inst/scripts
inst/scripts/blastParser
inst/scripts/dbsublocParser
inst/scripts/equalParser
inst/scripts/interproParser
inst/scripts/ipiParser
inst/scripts/ipiParser_DB
inst/scripts/mergeParser
inst/scripts/mppiParser
inst/scripts/pfamNameParser
inst/scripts/pfamParser
inst/scripts/refseqParser
inst/scripts/refseqParser_DB
inst/scripts/spParser
inst/scripts/spParser_DB
inst/templates
inst/templates/3DID_DB
inst/templates/3DID_DB/Anno.Rd
inst/templates/3DID_DB/DDI.Rd
inst/templates/3DID_DB/MAPCOUNTS.Rd
inst/templates/3DID_DB/NAMESPACE
inst/templates/3DID_DB/_dbconn.Rd
inst/templates/3DID_DB/zzz.R
inst/templates/Anno.Rd
inst/templates/BACELLO_DB
inst/templates/BACELLO_DB/Anno.Rd
inst/templates/BACELLO_DB/MAPCOUNTS.Rd
inst/templates/BACELLO_DB/NAMESPACE
inst/templates/BACELLO_DB/SEQ.Rd
inst/templates/BACELLO_DB/SUBCELL.Rd
inst/templates/BACELLO_DB/_dbconn.Rd
inst/templates/BACELLO_DB/zzz.R
inst/templates/CROSS_DB
inst/templates/CROSS_DB/Anno.Rd
inst/templates/CROSS_DB/MAPCOUNTS.Rd
inst/templates/CROSS_DB/MATCH.Rd
inst/templates/CROSS_DB/NAMESPACE
inst/templates/CROSS_DB/ORGANISM.Rd
inst/templates/CROSS_DB/SEQ.Rd
inst/templates/CROSS_DB/_dbconn.Rd
inst/templates/CROSS_DB/zzz.R
inst/templates/DBSUBLOC_DB
inst/templates/DBSUBLOC_DB/Anno.Rd
inst/templates/DBSUBLOC_DB/DE.Rd
inst/templates/DBSUBLOC_DB/MAPCOUNTS.Rd
inst/templates/DBSUBLOC_DB/NAMESPACE
inst/templates/DBSUBLOC_DB/ORGANISM.Rd
inst/templates/DBSUBLOC_DB/SEQ.Rd
inst/templates/DBSUBLOC_DB/SUBCELL.Rd
inst/templates/DBSUBLOC_DB/_dbconn.Rd
inst/templates/DBSUBLOC_DB/zzz.R
inst/templates/DNAME_DB
inst/templates/DNAME_DB/Anno.Rd
inst/templates/DNAME_DB/GO2NAME.Rd
inst/templates/DNAME_DB/INTERPRO2NAME.Rd
inst/templates/DNAME_DB/MAPCOUNTS.Rd
inst/templates/DNAME_DB/NAMESPACE
inst/templates/DNAME_DB/PATH2DE.Rd
inst/templates/DNAME_DB/PFAM2DE.Rd
inst/templates/DNAME_DB/PFAM2NAME.Rd
inst/templates/DNAME_DB/TAXID2NAME.Rd
inst/templates/DNAME_DB/_dbconn.Rd
inst/templates/DNAME_DB/zzz.R
inst/templates/DOMINE_DB
inst/templates/DOMINE_DB/Anno.Rd
inst/templates/DOMINE_DB/DDI.Rd
inst/templates/DOMINE_DB/MAPCOUNTS.Rd
inst/templates/DOMINE_DB/METHOD.Rd
inst/templates/DOMINE_DB/NAMESPACE
inst/templates/DOMINE_DB/_dbconn.Rd
inst/templates/DOMINE_DB/zzz.R
inst/templates/GENEINT_DB
inst/templates/GENEINT_DB/Anno.Rd
inst/templates/GENEINT_DB/GGI.Rd
inst/templates/GENEINT_DB/MAPCOUNTS.Rd
inst/templates/GENEINT_DB/NAMESPACE
inst/templates/GENEINT_DB/TAXID.Rd
inst/templates/GENEINT_DB/_dbconn.Rd
inst/templates/GENEINT_DB/zzz.R
inst/templates/GOA_DB
inst/templates/GOA_DB/Anno.Rd
inst/templates/GOA_DB/DE.Rd
inst/templates/GOA_DB/GO.Rd
inst/templates/GOA_DB/MAPCOUNTS.Rd
inst/templates/GOA_DB/NAMESPACE
inst/templates/GOA_DB/ORGANISM.Rd
inst/templates/GOA_DB/SPID.Rd
inst/templates/GOA_DB/_dbconn.Rd
inst/templates/GOA_DB/zzz.R
inst/templates/HOMOLOGENE_DB
inst/templates/HOMOLOGENE_DB/Anno.Rd
inst/templates/HOMOLOGENE_DB/HOMOLOG.Rd
inst/templates/HOMOLOGENE_DB/HOMOLOG2AC.Rd
inst/templates/HOMOLOGENE_DB/HOMOLOG2GI.Rd
inst/templates/HOMOLOGENE_DB/MAPCOUNTS.Rd
inst/templates/HOMOLOGENE_DB/NAMESPACE
inst/templates/HOMOLOGENE_DB/ORGANISM.Rd
inst/templates/HOMOLOGENE_DB/SYMBOL.Rd
inst/templates/HOMOLOGENE_DB/TAXID.Rd
inst/templates/HOMOLOGENE_DB/_dbconn.Rd
inst/templates/HOMOLOGENE_DB/zzz.R
inst/templates/INPARANOID_DB
inst/templates/INPARANOID_DB/Anno.Rd
inst/templates/INPARANOID_DB/MAPCOUNTS.Rd
inst/templates/INPARANOID_DB/NAMESPACE
inst/templates/INPARANOID_DB/ORGANISM.Rd
inst/templates/INPARANOID_DB/ORTHOLOG.Rd
inst/templates/INPARANOID_DB/SEQ.Rd
inst/templates/INPARANOID_DB/_dbconn.Rd
inst/templates/INPARANOID_DB/zzz.R
inst/templates/INTACT_DB
inst/templates/INTACT_DB/Anno.Rd
inst/templates/INTACT_DB/MAPCOUNTS.Rd
inst/templates/INTACT_DB/NAMESPACE
inst/templates/INTACT_DB/PPI.Rd
inst/templates/INTACT_DB/TAXID.Rd
inst/templates/INTACT_DB/_dbconn.Rd
inst/templates/INTACT_DB/zzz.R
inst/templates/IPI_DB
inst/templates/IPI_DB/Anno.Rd
inst/templates/IPI_DB/DE.Rd
inst/templates/IPI_DB/GENEID.Rd
inst/templates/IPI_DB/GI.Rd
inst/templates/IPI_DB/GO.Rd
inst/templates/IPI_DB/INTERPRO.Rd
inst/templates/IPI_DB/IPIAC.Rd
inst/templates/IPI_DB/IPIACs.Rd
inst/templates/IPI_DB/KEGG.Rd
inst/templates/IPI_DB/LEN.Rd
inst/templates/IPI_DB/MAPCOUNTS.Rd
inst/templates/IPI_DB/MW.Rd
inst/templates/IPI_DB/NAMESPACE
inst/templates/IPI_DB/ORGANISM.Rd
inst/templates/IPI_DB/PATH.Rd
inst/templates/IPI_DB/PFAM.Rd
inst/templates/IPI_DB/PROSITE.Rd
inst/templates/IPI_DB/REFSEQ.Rd
inst/templates/IPI_DB/SEQ.Rd
inst/templates/IPI_DB/SPAC.Rd
inst/templates/IPI_DB/SPID.Rd
inst/templates/IPI_DB/SYMBOL.Rd
inst/templates/IPI_DB/UNIGENE.Rd
inst/templates/IPI_DB/_dbconn.Rd
inst/templates/IPI_DB/zzz.R
inst/templates/MPPI_DB
inst/templates/MPPI_DB/Anno.Rd
inst/templates/MPPI_DB/MAPCOUNTS.Rd
inst/templates/MPPI_DB/NAMESPACE
inst/templates/MPPI_DB/PPI.Rd
inst/templates/MPPI_DB/_dbconn.Rd
inst/templates/MPPI_DB/zzz.R
inst/templates/PEPTIDEATLAS_DB
inst/templates/PEPTIDEATLAS_DB/Anno.Rd
inst/templates/PEPTIDEATLAS_DB/MAPCOUNTS.Rd
inst/templates/PEPTIDEATLAS_DB/NAMESPACE
inst/templates/PEPTIDEATLAS_DB/PEP2CHR.Rd
inst/templates/PEPTIDEATLAS_DB/PEP2PROTEIN.Rd
inst/templates/PEPTIDEATLAS_DB/SEQ.Rd
inst/templates/PEPTIDEATLAS_DB/_dbconn.Rd
inst/templates/PEPTIDEATLAS_DB/zzz.R
inst/templates/PKGNAMEBF.Rd
inst/templates/PKGNAMEBF2IPI.Rd
inst/templates/PKGNAMECHR.Rd
inst/templates/PKGNAMECHROMOSOME.Rd
inst/templates/PKGNAMEDDIENTRY.Rd
inst/templates/PKGNAMEDE.Rd
inst/templates/PKGNAMEDE2PFAM.Rd
inst/templates/PKGNAMEDISEASE.Rd
inst/templates/PKGNAMEEC.Rd
inst/templates/PKGNAMEEND.Rd
inst/templates/PKGNAMEFUNCTION.Rd
inst/templates/PKGNAMEGENEID.Rd
inst/templates/PKGNAMEGENEPAIR.Rd
inst/templates/PKGNAMEGI.Rd
inst/templates/PKGNAMEGI2IPI.Rd
inst/templates/PKGNAMEGI2SP.Rd
inst/templates/PKGNAMEGI2TREMBL.Rd
inst/templates/PKGNAMEGISQ.Rd
inst/templates/PKGNAMEGN.Rd
inst/templates/PKGNAMEGO.Rd
inst/templates/PKGNAMEGO2ANCESTOR.Rd
inst/templates/PKGNAMEGO2CHILDREN.Rd
inst/templates/PKGNAMEGO2GI.Rd
inst/templates/PKGNAMEGO2IPIID.Rd
inst/templates/PKGNAMEGO2NAME.Rd
inst/templates/PKGNAMEGO2OBSOLETE.Rd
inst/templates/PKGNAMEGO2OFFSPRING.Rd
inst/templates/PKGNAMEGO2PARENTS.Rd
inst/templates/PKGNAMEGO2SPID.Rd
inst/templates/PKGNAMEGO2TERM.Rd
inst/templates/PKGNAMEGO2UPID.Rd
inst/templates/PKGNAMEHOMOLOGENE.Rd
inst/templates/PKGNAMEINTERACTION.Rd
inst/templates/PKGNAMEINTERPPRO2UP.Rd
inst/templates/PKGNAMEINTERPRO.Rd
inst/templates/PKGNAMEINTERPRO2NAME.Rd
inst/templates/PKGNAMEIPI2GI.Rd
inst/templates/PKGNAMEIPI2SP.Rd
inst/templates/PKGNAMEIPI2TREMBL.Rd
inst/templates/PKGNAMEIPIAC.Rd
inst/templates/PKGNAMEIPIACs.Rd
inst/templates/PKGNAMEIPIID.Rd
inst/templates/PKGNAMEIPISQ.Rd
inst/templates/PKGNAMEKEGG.Rd
inst/templates/PKGNAMEKEGG2NAME.Rd
inst/templates/PKGNAMEKEY.Rd
inst/templates/PKGNAMELEN.Rd
inst/templates/PKGNAMEMW.Rd
inst/templates/PKGNAMENAME2INTERPRO.Rd
inst/templates/PKGNAMENAME2KEGG.Rd
inst/templates/PKGNAMENAME2PFAM.Rd
inst/templates/PKGNAMENAME2TAXID.Rd
inst/templates/PKGNAMEOMIM.Rd
inst/templates/PKGNAMEORGANISM.Rd
inst/templates/PKGNAMEORIENT.Rd
inst/templates/PKGNAMEORTHOLOG.Rd
inst/templates/PKGNAMEPARAMETER.Rd
inst/templates/PKGNAMEPATH.Rd
inst/templates/PKGNAMEPATH2GI.Rd
inst/templates/PKGNAMEPATH2IPIID.Rd
inst/templates/PKGNAMEPATH2SPID.Rd
inst/templates/PKGNAMEPATHID2NAME.Rd
inst/templates/PKGNAMEPATHNAME2ID.Rd
inst/templates/PKGNAMEPDB.Rd
inst/templates/PKGNAMEPDB2SCOP.Rd
inst/templates/PKGNAMEPEPMAP.Rd
inst/templates/PKGNAMEPEPSQ.Rd
inst/templates/PKGNAMEPFAM.Rd
inst/templates/PKGNAMEPFAM2DE.Rd
inst/templates/PKGNAMEPFAM2NAME.Rd
inst/templates/PKGNAMEPFAM2SP.Rd
inst/templates/PKGNAMEPFAMPAIR.Rd
inst/templates/PKGNAMEPMID.Rd
inst/templates/PKGNAMEPPIENTRY.Rd
inst/templates/PKGNAMEPROSITE.Rd
inst/templates/PKGNAMEPROTEINIDs.Rd
inst/templates/PKGNAMEPTM.Rd
inst/templates/PKGNAMEPTM2SITE.Rd
inst/templates/PKGNAMEREFSEQ.Rd
inst/templates/PKGNAMEREFSEQPAIR.Rd
inst/templates/PKGNAMESCOP2CHILDREN.Rd
inst/templates/PKGNAMESCOP2CLASSIFICATION.Rd
inst/templates/PKGNAMESCOP2DE.Rd
inst/templates/PKGNAMESCOP2NAME.Rd
inst/templates/PKGNAMESCOP2PARENT.Rd
inst/templates/PKGNAMESCOP2PDB.Rd
inst/templates/PKGNAMESCOP2TYPE.Rd
inst/templates/PKGNAMESOURCE.Rd
inst/templates/PKGNAMESP2GI.Rd
inst/templates/PKGNAMESP2IPI.Rd
inst/templates/PKGNAMESP2TREMBL.Rd
inst/templates/PKGNAMESPAC.Rd
inst/templates/PKGNAMESPAC2PFAM.Rd
inst/templates/PKGNAMESPACs.Rd
inst/templates/PKGNAMESPECIES.Rd
inst/templates/PKGNAMESPID.Rd
inst/templates/PKGNAMESPID2PFAM.Rd
inst/templates/PKGNAMESPSQ.Rd
inst/templates/PKGNAMESQ.Rd
inst/templates/PKGNAMESTART.Rd
inst/templates/PKGNAMESUBCELL.Rd
inst/templates/PKGNAMESUBCELLULAR.Rd
inst/templates/PKGNAMESUBCELLULAR2SPAC.Rd
inst/templates/PKGNAMESUBCELLULAR2SPID.Rd
inst/templates/PKGNAMESYMBOL.Rd
inst/templates/PKGNAMETAXID2NAME.Rd
inst/templates/PKGNAMETISSUE.Rd
inst/templates/PKGNAMETREMBL2GI.Rd
inst/templates/PKGNAMETREMBL2IPI.Rd
inst/templates/PKGNAMETREMBL2SP.Rd
inst/templates/PKGNAMETREMBLSQ.Rd
inst/templates/PKGNAMEUNIGENE.Rd
inst/templates/PKGNAMEUPAC.Rd
inst/templates/PKGNAMEUPACPAIR.Rd
inst/templates/PKGNAMEUPID.Rd
inst/templates/PKGNAMEUPID2INTERPRO.Rd
inst/templates/PKGNAMEUPPAIR.Rd
inst/templates/PSEQ_DB
inst/templates/PSEQ_DB/Anno.Rd
inst/templates/PSEQ_DB/NAMESPACE
inst/templates/PSEQ_DB/_dbconn.Rd
inst/templates/PSEQ_DB/zzz.R
inst/templates/REFSEQ_DB
inst/templates/REFSEQ_DB/Anno.Rd
inst/templates/REFSEQ_DB/DE.Rd
inst/templates/REFSEQ_DB/GENEID.Rd
inst/templates/REFSEQ_DB/GO.Rd
inst/templates/REFSEQ_DB/KEGG.Rd
inst/templates/REFSEQ_DB/MAPCOUNTS.Rd
inst/templates/REFSEQ_DB/NAMESPACE
inst/templates/REFSEQ_DB/ORGANISM.Rd
inst/templates/REFSEQ_DB/PATH.Rd
inst/templates/REFSEQ_DB/REFSEQ.Rd
inst/templates/REFSEQ_DB/SEQ.Rd
inst/templates/REFSEQ_DB/SYMBOL.Rd
inst/templates/REFSEQ_DB/_dbconn.Rd
inst/templates/REFSEQ_DB/zzz.R
inst/templates/SCOP_DB
inst/templates/SCOP_DB/Anno.Rd
inst/templates/SCOP_DB/CHILDREN.Rd
inst/templates/SCOP_DB/CLASSIFICATION.Rd
inst/templates/SCOP_DB/DE.Rd
inst/templates/SCOP_DB/MAPCOUNTS.Rd
inst/templates/SCOP_DB/NAME.Rd
inst/templates/SCOP_DB/NAMESPACE
inst/templates/SCOP_DB/PARENT.Rd
inst/templates/SCOP_DB/PDB2CF.Rd
inst/templates/SCOP_DB/PDB2CL.Rd
inst/templates/SCOP_DB/PDB2DM.Rd
inst/templates/SCOP_DB/PDB2FA.Rd
inst/templates/SCOP_DB/PDB2PX.Rd
inst/templates/SCOP_DB/PDB2SF.Rd
inst/templates/SCOP_DB/PDB2SP.Rd
inst/templates/SCOP_DB/TYPE.Rd
inst/templates/SCOP_DB/_dbconn.Rd
inst/templates/SCOP_DB/zzz.R
inst/templates/SP_DB
inst/templates/SP_DB/Anno.Rd
inst/templates/SP_DB/DE.Rd
inst/templates/SP_DB/DISEASE.Rd
inst/templates/SP_DB/FUNCTION.Rd
inst/templates/SP_DB/GENEID.Rd
inst/templates/SP_DB/GN.Rd
inst/templates/SP_DB/GO.Rd
inst/templates/SP_DB/INT.Rd
inst/templates/SP_DB/INTERPRO.Rd
inst/templates/SP_DB/KEGG.Rd
inst/templates/SP_DB/LEN.Rd
inst/templates/SP_DB/MAPCOUNTS.Rd
inst/templates/SP_DB/MW.Rd
inst/templates/SP_DB/NAMESPACE
inst/templates/SP_DB/ORGANISM.Rd
inst/templates/SP_DB/PATH.Rd
inst/templates/SP_DB/PDB.Rd
inst/templates/SP_DB/PFAM.Rd
inst/templates/SP_DB/PMID.Rd
inst/templates/SP_DB/PROSITE.Rd
inst/templates/SP_DB/REFSEQ.Rd
inst/templates/SP_DB/SEQ.Rd
inst/templates/SP_DB/SPAC.Rd
inst/templates/SP_DB/SPACs.Rd
inst/templates/SP_DB/SUBCELL.Rd
inst/templates/SP_DB/SYMBOL.Rd
inst/templates/SP_DB/TISSUE.Rd
inst/templates/SP_DB/UNIGENE.Rd
inst/templates/SP_DB/_dbconn.Rd
inst/templates/SP_DB/zzz.R
inst/templates/SYSBODYFLUID_DB
inst/templates/SYSBODYFLUID_DB/Anno.Rd
inst/templates/SYSBODYFLUID_DB/BF.Rd
inst/templates/SYSBODYFLUID_DB/BF2IPI.Rd
inst/templates/SYSBODYFLUID_DB/MAPCOUNTS.Rd
inst/templates/SYSBODYFLUID_DB/NAMESPACE
inst/templates/SYSBODYFLUID_DB/ORGANISM.Rd
inst/templates/SYSBODYFLUID_DB/PMID2BF.Rd
inst/templates/SYSBODYFLUID_DB/PMID2ENGINE.Rd
inst/templates/SYSBODYFLUID_DB/PMID2PLATFORM.Rd
inst/templates/SYSBODYFLUID_DB/PMID2SAMPLE.Rd
inst/templates/SYSBODYFLUID_DB/PMID2TITLE.Rd
inst/templates/SYSBODYFLUID_DB/_dbconn.Rd
inst/templates/SYSBODYFLUID_DB/zzz.R
inst/templates/SYSPTM_DB
inst/templates/SYSPTM_DB/Anno.Rd
inst/templates/SYSPTM_DB/DE.Rd
inst/templates/SYSPTM_DB/GENEID.Rd
inst/templates/SYSPTM_DB/GN.Rd
inst/templates/SYSPTM_DB/IDs.Rd
inst/templates/SYSPTM_DB/MAPCOUNTS.Rd
inst/templates/SYSPTM_DB/NAMESPACE
inst/templates/SYSPTM_DB/ORGANISM.Rd
inst/templates/SYSPTM_DB/PTMTYPE.Rd
inst/templates/SYSPTM_DB/SEQ.Rd
inst/templates/SYSPTM_DB/_dbconn.Rd
inst/templates/SYSPTM_DB/zzz.R
inst/templates/merge.Rd
man
man/GOABuilder_DB.Rd
man/HomoloGeneBuilder_DB.Rd
man/InParanoidBuilder_DB.Rd
man/PeptideAtlasBuilder_DB.Rd
man/bfBuilder_DB.Rd
man/createAnnObjs.Rd
man/crossBuilder_DB.Rd
man/dNameBuilder_DB.Rd
man/getSrcUrl.Rd
man/initClasses.Rd
man/intBuilder_DB.Rd
man/loadFromUrl.Rd
man/makeLLDB.Rd
man/pBaseBuilder_DB.Rd
man/pSeqBuilder_DB.Rd
man/processData.Rd
man/ptmBuilder_DB.Rd
man/scopBuilder_DB.Rd
man/subcellBuilder_DB.Rd
man/writeData_DB.Rd
man/writeManPage.Rd
man/zzz.Rd
vignettes
vignettes/PAnnBuilder.Rnw
vignettes/PAnnBuilder.bib
vignettes/fulltext.pdf
PAnnBuilder documentation built on May 20, 2017, 9:31 p.m.

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