PAnnBuilder: Protein annotation data package builder

Processing annotation data from public data repositories and building protein-centric annotation data packages.

AuthorLi Hong lihong@sibs.ac.cn
Date of publicationNone
MaintainerLi Hong <sysptm@gmail.com>
LicenseLGPL (>= 2.0)
Version1.38.0
http://www.biosino.org/PAnnBuilder

View on Bioconductor

Functions

bfBuilder_DB Man page
.callPerl Man page
copyTemplates Man page
copyTemplates_DB Man page
createAnnObjs Man page
createEmptyDPkg Man page
createSeeds Man page
crossBuilder_DB Man page
dbschema Man page
dbschema,AnnDbObj-method Man page
dbschema,DBIConnection-method Man page
dbschema,environment-method Man page
descriptionInfo Man page
dNameBuilder_DB Man page
fasta2list Man page
fileMuncher Man page
fileMuncher_DB Man page
get3DIDBuilt Man page
get3DIDUrl Man page
getALLBuilt Man page
getALLUrl Man page
getBACELLOBuilt Man page
getBACELLOUrl Man page
getBaseData Man page
getBaseParsers Man page
getDBSUBLOCBuilt Man page
getDBSUBLOCUrl Man page
getDOMINEBuilt Man page
getDOMINEUrl Man page
getGENEINTBuilt Man page
getGENEINTUrl Man page
getGOABuilt Man page
getGOAUrl Man page
getGOUrl Man page
getHOMOLOGENEBuilt Man page
getHOMOLOGENEUrl Man page
getINPARANOIDBuilt Man page
getINPARANOIDUrl Man page
getINTACTBuilt Man page
getINTACTUrl Man page
getINTERPROBuilt Man page
getINTERPROUrl Man page
getIPIBuilt Man page
getIPISQUrl Man page
getIPIUrl Man page
getKEGGUrl Man page
getMPPIBuilt Man page
getMPPIUrl Man page
getPEPTIDEATLASBuilt Man page
getPEPTIDEATLASUrl Man page
getPFAMBuilt Man page
getPFAMUrl Man page
getPROSITENAMEBuilt Man page
getPROSITENAMEUrl Man page
getREFSEQBuilt Man page
getREFSEQSQUrl Man page
getREFSEQUrl Man page
getRepList Man page
getSCOPBuilt Man page
getSCOPUrl Man page
getShortSciName Man page
getSPBuilt Man page
getSPUrl Man page
getSrcBuilt Man page
getSrcObjs Man page
getSrcSQBuilt Man page
getSrcSQUrl Man page
getSrcUrl Man page
getSYSBODYFLUIDBuilt Man page
getSYSBODYFLUIDUrl Man page
getSYSPTMBuilt Man page
getSYSPTMUrl Man page
getTREMBLBuilt Man page
getTREMBLUrl Man page
GOABuilder_DB Man page
HomoloGeneBuilder_DB Man page
idBlast Man page
InParanoidBuilder_DB Man page
intBuilder_DB Man page
loadFromUrl Man page
makeLLDB Man page
mergeRowByKey Man page
.onLoad Man page
organism2alias Man page
organism2species Man page
organism2taxID Man page
pBase Man page
pBaseBuilder_DB Man page
PeptideAtlasBuilder_DB Man page
processData Man page
pSeqBuilder_DB Man page
ptmBuilder_DB Man page
scopBuilder_DB Man page
sourceURLs Man page
speciesNorganism Man page
splitEntry Man page
.srcUrls Man page
subcellBuilder_DB Man page
taxID2organism Man page
taxLists Man page
twoStepSplit Man page
unzipFile Man page
validateUrl Man page
write3DIDData_DB Man page
writeBACELLOData_DB Man page
writeData_DB Man page
writeDBSUBLOCData_DB Man page
writeDescription Man page
writeDescription_DB Man page
writeDOMINEData_DB Man page
writeGENEINTData_DB Man page
writeGOAData_DB Man page
writeGOName_DB Man page
writeHomoloGeneData_DB Man page
writeInParanoidData_DB Man page
writeInput Man page
writeInputBLAST Man page
writeInputINTERPRO Man page
writeInputIPI Man page
writeInputPFAM Man page
writeInputREFSEQ Man page
writeInputSP Man page
writeINTACTData_DB Man page
writeINTERPROName_DB Man page
writeIPIData_DB Man page
writeKEGGName_DB Man page
writeManAnno Man page
writeManAnno_DB Man page
writeManMerge Man page
writeManSQ Man page
writeMeta_DB Man page
writeMPPIData_DB Man page
writeName_DB Man page
writeOutput Man page
writePeptideAtlasData_DB Man page
writePFAMName_DB Man page
writeREFSEQData_DB Man page
writeSCOPData_DB Man page
writeSPData_DB Man page
writeSYSBODYFLUIDData_DB Man page
writeSYSPTMData_DB Man page
writeTAXName_DB Man page

Files

PAnnBuilder/DESCRIPTION
PAnnBuilder/NAMESPACE
PAnnBuilder/R
PAnnBuilder/R/GOABuilder_DB.R PAnnBuilder/R/HomoloGeneBuilder_DB.R PAnnBuilder/R/InParanoidBuilder_DB.R PAnnBuilder/R/PeptideAtlasBuilder_DB.R PAnnBuilder/R/bfBuilder_DB.R PAnnBuilder/R/createAnnObjs.R PAnnBuilder/R/crossBuilder_DB.R PAnnBuilder/R/dNameBuilder_DB.R PAnnBuilder/R/getSrcUrl.R PAnnBuilder/R/initClasses.R PAnnBuilder/R/intBuilder_DB.R PAnnBuilder/R/loadFromUrl.R PAnnBuilder/R/makeLLDB.R PAnnBuilder/R/mapCountsBuilder.R PAnnBuilder/R/pBaseBuilder_DB.R PAnnBuilder/R/pSeqBuilder_DB.R PAnnBuilder/R/processData.R PAnnBuilder/R/ptmBuilder_DB.R PAnnBuilder/R/scopBuilder_DB.R PAnnBuilder/R/subcellBuilder_DB.R PAnnBuilder/R/writeData_DB.R PAnnBuilder/R/writeManPage.R PAnnBuilder/R/zzz.R
PAnnBuilder/build
PAnnBuilder/build/vignette.rds
PAnnBuilder/data
PAnnBuilder/data/descriptionInfo.R
PAnnBuilder/data/descriptionInfo.txt
PAnnBuilder/data/sourceURLs.R
PAnnBuilder/data/sourceURLs.txt
PAnnBuilder/data/taxLists.R
PAnnBuilder/data/taxLists.txt
PAnnBuilder/inst
PAnnBuilder/inst/DBschemas
PAnnBuilder/inst/DBschemas/schemas_1.0
PAnnBuilder/inst/DBschemas/schemas_1.0/3DID_DB.sql
PAnnBuilder/inst/DBschemas/schemas_1.0/BACELLO_DB.sql
PAnnBuilder/inst/DBschemas/schemas_1.0/CROSS_DB.sql
PAnnBuilder/inst/DBschemas/schemas_1.0/DBSUBLOC.sql
PAnnBuilder/inst/DBschemas/schemas_1.0/DNAME_DB.sql
PAnnBuilder/inst/DBschemas/schemas_1.0/DOMINE_DB.sql
PAnnBuilder/inst/DBschemas/schemas_1.0/GENEINT_DB.sql
PAnnBuilder/inst/DBschemas/schemas_1.0/GOA_DB.sql
PAnnBuilder/inst/DBschemas/schemas_1.0/HOMOLOGENE_DB.sql
PAnnBuilder/inst/DBschemas/schemas_1.0/INPARANOID_DB.sql
PAnnBuilder/inst/DBschemas/schemas_1.0/INTACT_DB.sql
PAnnBuilder/inst/DBschemas/schemas_1.0/IPI_DB.sql
PAnnBuilder/inst/DBschemas/schemas_1.0/MPPI_DB.sql
PAnnBuilder/inst/DBschemas/schemas_1.0/PEPTIDEALTAS_DB.sql
PAnnBuilder/inst/DBschemas/schemas_1.0/REFSEQ_DB.sql
PAnnBuilder/inst/DBschemas/schemas_1.0/SCOP_DB.sql
PAnnBuilder/inst/DBschemas/schemas_1.0/SP_DB.sql
PAnnBuilder/inst/DBschemas/schemas_1.0/SYSBODYFLUID_DB.sql
PAnnBuilder/inst/DBschemas/schemas_1.0/SYSPTM_DB.sql
PAnnBuilder/inst/doc
PAnnBuilder/inst/doc/PAnnBuilder.R
PAnnBuilder/inst/doc/PAnnBuilder.Rnw
PAnnBuilder/inst/doc/PAnnBuilder.pdf
PAnnBuilder/inst/extdata
PAnnBuilder/inst/extdata/query.example
PAnnBuilder/inst/scripts
PAnnBuilder/inst/scripts/blastParser
PAnnBuilder/inst/scripts/dbsublocParser
PAnnBuilder/inst/scripts/equalParser
PAnnBuilder/inst/scripts/interproParser
PAnnBuilder/inst/scripts/ipiParser
PAnnBuilder/inst/scripts/ipiParser_DB
PAnnBuilder/inst/scripts/mergeParser
PAnnBuilder/inst/scripts/mppiParser
PAnnBuilder/inst/scripts/pfamNameParser
PAnnBuilder/inst/scripts/pfamParser
PAnnBuilder/inst/scripts/refseqParser
PAnnBuilder/inst/scripts/refseqParser_DB
PAnnBuilder/inst/scripts/spParser
PAnnBuilder/inst/scripts/spParser_DB
PAnnBuilder/inst/templates
PAnnBuilder/inst/templates/3DID_DB
PAnnBuilder/inst/templates/3DID_DB/Anno.Rd
PAnnBuilder/inst/templates/3DID_DB/DDI.Rd
PAnnBuilder/inst/templates/3DID_DB/MAPCOUNTS.Rd
PAnnBuilder/inst/templates/3DID_DB/NAMESPACE
PAnnBuilder/inst/templates/3DID_DB/_dbconn.Rd
PAnnBuilder/inst/templates/3DID_DB/zzz.R
PAnnBuilder/inst/templates/Anno.Rd
PAnnBuilder/inst/templates/BACELLO_DB
PAnnBuilder/inst/templates/BACELLO_DB/Anno.Rd
PAnnBuilder/inst/templates/BACELLO_DB/MAPCOUNTS.Rd
PAnnBuilder/inst/templates/BACELLO_DB/NAMESPACE
PAnnBuilder/inst/templates/BACELLO_DB/SEQ.Rd
PAnnBuilder/inst/templates/BACELLO_DB/SUBCELL.Rd
PAnnBuilder/inst/templates/BACELLO_DB/_dbconn.Rd
PAnnBuilder/inst/templates/BACELLO_DB/zzz.R
PAnnBuilder/inst/templates/CROSS_DB
PAnnBuilder/inst/templates/CROSS_DB/Anno.Rd
PAnnBuilder/inst/templates/CROSS_DB/MAPCOUNTS.Rd
PAnnBuilder/inst/templates/CROSS_DB/MATCH.Rd
PAnnBuilder/inst/templates/CROSS_DB/NAMESPACE
PAnnBuilder/inst/templates/CROSS_DB/ORGANISM.Rd
PAnnBuilder/inst/templates/CROSS_DB/SEQ.Rd
PAnnBuilder/inst/templates/CROSS_DB/_dbconn.Rd
PAnnBuilder/inst/templates/CROSS_DB/zzz.R
PAnnBuilder/inst/templates/DBSUBLOC_DB
PAnnBuilder/inst/templates/DBSUBLOC_DB/Anno.Rd
PAnnBuilder/inst/templates/DBSUBLOC_DB/DE.Rd
PAnnBuilder/inst/templates/DBSUBLOC_DB/MAPCOUNTS.Rd
PAnnBuilder/inst/templates/DBSUBLOC_DB/NAMESPACE
PAnnBuilder/inst/templates/DBSUBLOC_DB/ORGANISM.Rd
PAnnBuilder/inst/templates/DBSUBLOC_DB/SEQ.Rd
PAnnBuilder/inst/templates/DBSUBLOC_DB/SUBCELL.Rd
PAnnBuilder/inst/templates/DBSUBLOC_DB/_dbconn.Rd
PAnnBuilder/inst/templates/DBSUBLOC_DB/zzz.R
PAnnBuilder/inst/templates/DNAME_DB
PAnnBuilder/inst/templates/DNAME_DB/Anno.Rd
PAnnBuilder/inst/templates/DNAME_DB/GO2NAME.Rd
PAnnBuilder/inst/templates/DNAME_DB/INTERPRO2NAME.Rd
PAnnBuilder/inst/templates/DNAME_DB/MAPCOUNTS.Rd
PAnnBuilder/inst/templates/DNAME_DB/NAMESPACE
PAnnBuilder/inst/templates/DNAME_DB/PATH2DE.Rd
PAnnBuilder/inst/templates/DNAME_DB/PFAM2DE.Rd
PAnnBuilder/inst/templates/DNAME_DB/PFAM2NAME.Rd
PAnnBuilder/inst/templates/DNAME_DB/TAXID2NAME.Rd
PAnnBuilder/inst/templates/DNAME_DB/_dbconn.Rd
PAnnBuilder/inst/templates/DNAME_DB/zzz.R
PAnnBuilder/inst/templates/DOMINE_DB
PAnnBuilder/inst/templates/DOMINE_DB/Anno.Rd
PAnnBuilder/inst/templates/DOMINE_DB/DDI.Rd
PAnnBuilder/inst/templates/DOMINE_DB/MAPCOUNTS.Rd
PAnnBuilder/inst/templates/DOMINE_DB/METHOD.Rd
PAnnBuilder/inst/templates/DOMINE_DB/NAMESPACE
PAnnBuilder/inst/templates/DOMINE_DB/_dbconn.Rd
PAnnBuilder/inst/templates/DOMINE_DB/zzz.R
PAnnBuilder/inst/templates/GENEINT_DB
PAnnBuilder/inst/templates/GENEINT_DB/Anno.Rd
PAnnBuilder/inst/templates/GENEINT_DB/GGI.Rd
PAnnBuilder/inst/templates/GENEINT_DB/MAPCOUNTS.Rd
PAnnBuilder/inst/templates/GENEINT_DB/NAMESPACE
PAnnBuilder/inst/templates/GENEINT_DB/TAXID.Rd
PAnnBuilder/inst/templates/GENEINT_DB/_dbconn.Rd
PAnnBuilder/inst/templates/GENEINT_DB/zzz.R
PAnnBuilder/inst/templates/GOA_DB
PAnnBuilder/inst/templates/GOA_DB/Anno.Rd
PAnnBuilder/inst/templates/GOA_DB/DE.Rd
PAnnBuilder/inst/templates/GOA_DB/GO.Rd
PAnnBuilder/inst/templates/GOA_DB/MAPCOUNTS.Rd
PAnnBuilder/inst/templates/GOA_DB/NAMESPACE
PAnnBuilder/inst/templates/GOA_DB/ORGANISM.Rd
PAnnBuilder/inst/templates/GOA_DB/SPID.Rd
PAnnBuilder/inst/templates/GOA_DB/_dbconn.Rd
PAnnBuilder/inst/templates/GOA_DB/zzz.R
PAnnBuilder/inst/templates/HOMOLOGENE_DB
PAnnBuilder/inst/templates/HOMOLOGENE_DB/Anno.Rd
PAnnBuilder/inst/templates/HOMOLOGENE_DB/HOMOLOG.Rd
PAnnBuilder/inst/templates/HOMOLOGENE_DB/HOMOLOG2AC.Rd
PAnnBuilder/inst/templates/HOMOLOGENE_DB/HOMOLOG2GI.Rd
PAnnBuilder/inst/templates/HOMOLOGENE_DB/MAPCOUNTS.Rd
PAnnBuilder/inst/templates/HOMOLOGENE_DB/NAMESPACE
PAnnBuilder/inst/templates/HOMOLOGENE_DB/ORGANISM.Rd
PAnnBuilder/inst/templates/HOMOLOGENE_DB/SYMBOL.Rd
PAnnBuilder/inst/templates/HOMOLOGENE_DB/TAXID.Rd
PAnnBuilder/inst/templates/HOMOLOGENE_DB/_dbconn.Rd
PAnnBuilder/inst/templates/HOMOLOGENE_DB/zzz.R
PAnnBuilder/inst/templates/INPARANOID_DB
PAnnBuilder/inst/templates/INPARANOID_DB/Anno.Rd
PAnnBuilder/inst/templates/INPARANOID_DB/MAPCOUNTS.Rd
PAnnBuilder/inst/templates/INPARANOID_DB/NAMESPACE
PAnnBuilder/inst/templates/INPARANOID_DB/ORGANISM.Rd
PAnnBuilder/inst/templates/INPARANOID_DB/ORTHOLOG.Rd
PAnnBuilder/inst/templates/INPARANOID_DB/SEQ.Rd
PAnnBuilder/inst/templates/INPARANOID_DB/_dbconn.Rd
PAnnBuilder/inst/templates/INPARANOID_DB/zzz.R
PAnnBuilder/inst/templates/INTACT_DB
PAnnBuilder/inst/templates/INTACT_DB/Anno.Rd
PAnnBuilder/inst/templates/INTACT_DB/MAPCOUNTS.Rd
PAnnBuilder/inst/templates/INTACT_DB/NAMESPACE
PAnnBuilder/inst/templates/INTACT_DB/PPI.Rd
PAnnBuilder/inst/templates/INTACT_DB/TAXID.Rd
PAnnBuilder/inst/templates/INTACT_DB/_dbconn.Rd
PAnnBuilder/inst/templates/INTACT_DB/zzz.R
PAnnBuilder/inst/templates/IPI_DB
PAnnBuilder/inst/templates/IPI_DB/Anno.Rd
PAnnBuilder/inst/templates/IPI_DB/DE.Rd
PAnnBuilder/inst/templates/IPI_DB/GENEID.Rd
PAnnBuilder/inst/templates/IPI_DB/GI.Rd
PAnnBuilder/inst/templates/IPI_DB/GO.Rd
PAnnBuilder/inst/templates/IPI_DB/INTERPRO.Rd
PAnnBuilder/inst/templates/IPI_DB/IPIAC.Rd
PAnnBuilder/inst/templates/IPI_DB/IPIACs.Rd
PAnnBuilder/inst/templates/IPI_DB/KEGG.Rd
PAnnBuilder/inst/templates/IPI_DB/LEN.Rd
PAnnBuilder/inst/templates/IPI_DB/MAPCOUNTS.Rd
PAnnBuilder/inst/templates/IPI_DB/MW.Rd
PAnnBuilder/inst/templates/IPI_DB/NAMESPACE
PAnnBuilder/inst/templates/IPI_DB/ORGANISM.Rd
PAnnBuilder/inst/templates/IPI_DB/PATH.Rd
PAnnBuilder/inst/templates/IPI_DB/PFAM.Rd
PAnnBuilder/inst/templates/IPI_DB/PROSITE.Rd
PAnnBuilder/inst/templates/IPI_DB/REFSEQ.Rd
PAnnBuilder/inst/templates/IPI_DB/SEQ.Rd
PAnnBuilder/inst/templates/IPI_DB/SPAC.Rd
PAnnBuilder/inst/templates/IPI_DB/SPID.Rd
PAnnBuilder/inst/templates/IPI_DB/SYMBOL.Rd
PAnnBuilder/inst/templates/IPI_DB/UNIGENE.Rd
PAnnBuilder/inst/templates/IPI_DB/_dbconn.Rd
PAnnBuilder/inst/templates/IPI_DB/zzz.R
PAnnBuilder/inst/templates/MPPI_DB
PAnnBuilder/inst/templates/MPPI_DB/Anno.Rd
PAnnBuilder/inst/templates/MPPI_DB/MAPCOUNTS.Rd
PAnnBuilder/inst/templates/MPPI_DB/NAMESPACE
PAnnBuilder/inst/templates/MPPI_DB/PPI.Rd
PAnnBuilder/inst/templates/MPPI_DB/_dbconn.Rd
PAnnBuilder/inst/templates/MPPI_DB/zzz.R
PAnnBuilder/inst/templates/PEPTIDEATLAS_DB
PAnnBuilder/inst/templates/PEPTIDEATLAS_DB/Anno.Rd
PAnnBuilder/inst/templates/PEPTIDEATLAS_DB/MAPCOUNTS.Rd
PAnnBuilder/inst/templates/PEPTIDEATLAS_DB/NAMESPACE
PAnnBuilder/inst/templates/PEPTIDEATLAS_DB/PEP2CHR.Rd
PAnnBuilder/inst/templates/PEPTIDEATLAS_DB/PEP2PROTEIN.Rd
PAnnBuilder/inst/templates/PEPTIDEATLAS_DB/SEQ.Rd
PAnnBuilder/inst/templates/PEPTIDEATLAS_DB/_dbconn.Rd
PAnnBuilder/inst/templates/PEPTIDEATLAS_DB/zzz.R
PAnnBuilder/inst/templates/PKGNAMEBF.Rd
PAnnBuilder/inst/templates/PKGNAMEBF2IPI.Rd
PAnnBuilder/inst/templates/PKGNAMECHR.Rd
PAnnBuilder/inst/templates/PKGNAMECHROMOSOME.Rd
PAnnBuilder/inst/templates/PKGNAMEDDIENTRY.Rd
PAnnBuilder/inst/templates/PKGNAMEDE.Rd
PAnnBuilder/inst/templates/PKGNAMEDE2PFAM.Rd
PAnnBuilder/inst/templates/PKGNAMEDISEASE.Rd
PAnnBuilder/inst/templates/PKGNAMEEC.Rd
PAnnBuilder/inst/templates/PKGNAMEEND.Rd
PAnnBuilder/inst/templates/PKGNAMEFUNCTION.Rd
PAnnBuilder/inst/templates/PKGNAMEGENEID.Rd
PAnnBuilder/inst/templates/PKGNAMEGENEPAIR.Rd
PAnnBuilder/inst/templates/PKGNAMEGI.Rd
PAnnBuilder/inst/templates/PKGNAMEGI2IPI.Rd
PAnnBuilder/inst/templates/PKGNAMEGI2SP.Rd
PAnnBuilder/inst/templates/PKGNAMEGI2TREMBL.Rd
PAnnBuilder/inst/templates/PKGNAMEGISQ.Rd
PAnnBuilder/inst/templates/PKGNAMEGN.Rd
PAnnBuilder/inst/templates/PKGNAMEGO.Rd
PAnnBuilder/inst/templates/PKGNAMEGO2ANCESTOR.Rd
PAnnBuilder/inst/templates/PKGNAMEGO2CHILDREN.Rd
PAnnBuilder/inst/templates/PKGNAMEGO2GI.Rd
PAnnBuilder/inst/templates/PKGNAMEGO2IPIID.Rd
PAnnBuilder/inst/templates/PKGNAMEGO2NAME.Rd
PAnnBuilder/inst/templates/PKGNAMEGO2OBSOLETE.Rd
PAnnBuilder/inst/templates/PKGNAMEGO2OFFSPRING.Rd
PAnnBuilder/inst/templates/PKGNAMEGO2PARENTS.Rd
PAnnBuilder/inst/templates/PKGNAMEGO2SPID.Rd
PAnnBuilder/inst/templates/PKGNAMEGO2TERM.Rd
PAnnBuilder/inst/templates/PKGNAMEGO2UPID.Rd
PAnnBuilder/inst/templates/PKGNAMEHOMOLOGENE.Rd
PAnnBuilder/inst/templates/PKGNAMEINTERACTION.Rd
PAnnBuilder/inst/templates/PKGNAMEINTERPPRO2UP.Rd
PAnnBuilder/inst/templates/PKGNAMEINTERPRO.Rd
PAnnBuilder/inst/templates/PKGNAMEINTERPRO2NAME.Rd
PAnnBuilder/inst/templates/PKGNAMEIPI2GI.Rd
PAnnBuilder/inst/templates/PKGNAMEIPI2SP.Rd
PAnnBuilder/inst/templates/PKGNAMEIPI2TREMBL.Rd
PAnnBuilder/inst/templates/PKGNAMEIPIAC.Rd
PAnnBuilder/inst/templates/PKGNAMEIPIACs.Rd
PAnnBuilder/inst/templates/PKGNAMEIPIID.Rd
PAnnBuilder/inst/templates/PKGNAMEIPISQ.Rd
PAnnBuilder/inst/templates/PKGNAMEKEGG.Rd
PAnnBuilder/inst/templates/PKGNAMEKEGG2NAME.Rd
PAnnBuilder/inst/templates/PKGNAMEKEY.Rd
PAnnBuilder/inst/templates/PKGNAMELEN.Rd
PAnnBuilder/inst/templates/PKGNAMEMW.Rd
PAnnBuilder/inst/templates/PKGNAMENAME2INTERPRO.Rd
PAnnBuilder/inst/templates/PKGNAMENAME2KEGG.Rd
PAnnBuilder/inst/templates/PKGNAMENAME2PFAM.Rd
PAnnBuilder/inst/templates/PKGNAMENAME2TAXID.Rd
PAnnBuilder/inst/templates/PKGNAMEOMIM.Rd
PAnnBuilder/inst/templates/PKGNAMEORGANISM.Rd
PAnnBuilder/inst/templates/PKGNAMEORIENT.Rd
PAnnBuilder/inst/templates/PKGNAMEORTHOLOG.Rd
PAnnBuilder/inst/templates/PKGNAMEPARAMETER.Rd
PAnnBuilder/inst/templates/PKGNAMEPATH.Rd
PAnnBuilder/inst/templates/PKGNAMEPATH2GI.Rd
PAnnBuilder/inst/templates/PKGNAMEPATH2IPIID.Rd
PAnnBuilder/inst/templates/PKGNAMEPATH2SPID.Rd
PAnnBuilder/inst/templates/PKGNAMEPATHID2NAME.Rd
PAnnBuilder/inst/templates/PKGNAMEPATHNAME2ID.Rd
PAnnBuilder/inst/templates/PKGNAMEPDB.Rd
PAnnBuilder/inst/templates/PKGNAMEPDB2SCOP.Rd
PAnnBuilder/inst/templates/PKGNAMEPEPMAP.Rd
PAnnBuilder/inst/templates/PKGNAMEPEPSQ.Rd
PAnnBuilder/inst/templates/PKGNAMEPFAM.Rd
PAnnBuilder/inst/templates/PKGNAMEPFAM2DE.Rd
PAnnBuilder/inst/templates/PKGNAMEPFAM2NAME.Rd
PAnnBuilder/inst/templates/PKGNAMEPFAM2SP.Rd
PAnnBuilder/inst/templates/PKGNAMEPFAMPAIR.Rd
PAnnBuilder/inst/templates/PKGNAMEPMID.Rd
PAnnBuilder/inst/templates/PKGNAMEPPIENTRY.Rd
PAnnBuilder/inst/templates/PKGNAMEPROSITE.Rd
PAnnBuilder/inst/templates/PKGNAMEPROTEINIDs.Rd
PAnnBuilder/inst/templates/PKGNAMEPTM.Rd
PAnnBuilder/inst/templates/PKGNAMEPTM2SITE.Rd
PAnnBuilder/inst/templates/PKGNAMEREFSEQ.Rd
PAnnBuilder/inst/templates/PKGNAMEREFSEQPAIR.Rd
PAnnBuilder/inst/templates/PKGNAMESCOP2CHILDREN.Rd
PAnnBuilder/inst/templates/PKGNAMESCOP2CLASSIFICATION.Rd
PAnnBuilder/inst/templates/PKGNAMESCOP2DE.Rd
PAnnBuilder/inst/templates/PKGNAMESCOP2NAME.Rd
PAnnBuilder/inst/templates/PKGNAMESCOP2PARENT.Rd
PAnnBuilder/inst/templates/PKGNAMESCOP2PDB.Rd
PAnnBuilder/inst/templates/PKGNAMESCOP2TYPE.Rd
PAnnBuilder/inst/templates/PKGNAMESOURCE.Rd
PAnnBuilder/inst/templates/PKGNAMESP2GI.Rd
PAnnBuilder/inst/templates/PKGNAMESP2IPI.Rd
PAnnBuilder/inst/templates/PKGNAMESP2TREMBL.Rd
PAnnBuilder/inst/templates/PKGNAMESPAC.Rd
PAnnBuilder/inst/templates/PKGNAMESPAC2PFAM.Rd
PAnnBuilder/inst/templates/PKGNAMESPACs.Rd
PAnnBuilder/inst/templates/PKGNAMESPECIES.Rd
PAnnBuilder/inst/templates/PKGNAMESPID.Rd
PAnnBuilder/inst/templates/PKGNAMESPID2PFAM.Rd
PAnnBuilder/inst/templates/PKGNAMESPSQ.Rd
PAnnBuilder/inst/templates/PKGNAMESQ.Rd
PAnnBuilder/inst/templates/PKGNAMESTART.Rd
PAnnBuilder/inst/templates/PKGNAMESUBCELL.Rd
PAnnBuilder/inst/templates/PKGNAMESUBCELLULAR.Rd
PAnnBuilder/inst/templates/PKGNAMESUBCELLULAR2SPAC.Rd
PAnnBuilder/inst/templates/PKGNAMESUBCELLULAR2SPID.Rd
PAnnBuilder/inst/templates/PKGNAMESYMBOL.Rd
PAnnBuilder/inst/templates/PKGNAMETAXID2NAME.Rd
PAnnBuilder/inst/templates/PKGNAMETISSUE.Rd
PAnnBuilder/inst/templates/PKGNAMETREMBL2GI.Rd
PAnnBuilder/inst/templates/PKGNAMETREMBL2IPI.Rd
PAnnBuilder/inst/templates/PKGNAMETREMBL2SP.Rd
PAnnBuilder/inst/templates/PKGNAMETREMBLSQ.Rd
PAnnBuilder/inst/templates/PKGNAMEUNIGENE.Rd
PAnnBuilder/inst/templates/PKGNAMEUPAC.Rd
PAnnBuilder/inst/templates/PKGNAMEUPACPAIR.Rd
PAnnBuilder/inst/templates/PKGNAMEUPID.Rd
PAnnBuilder/inst/templates/PKGNAMEUPID2INTERPRO.Rd
PAnnBuilder/inst/templates/PKGNAMEUPPAIR.Rd
PAnnBuilder/inst/templates/PSEQ_DB
PAnnBuilder/inst/templates/PSEQ_DB/Anno.Rd
PAnnBuilder/inst/templates/PSEQ_DB/NAMESPACE
PAnnBuilder/inst/templates/PSEQ_DB/_dbconn.Rd
PAnnBuilder/inst/templates/PSEQ_DB/zzz.R
PAnnBuilder/inst/templates/REFSEQ_DB
PAnnBuilder/inst/templates/REFSEQ_DB/Anno.Rd
PAnnBuilder/inst/templates/REFSEQ_DB/DE.Rd
PAnnBuilder/inst/templates/REFSEQ_DB/GENEID.Rd
PAnnBuilder/inst/templates/REFSEQ_DB/GO.Rd
PAnnBuilder/inst/templates/REFSEQ_DB/KEGG.Rd
PAnnBuilder/inst/templates/REFSEQ_DB/MAPCOUNTS.Rd
PAnnBuilder/inst/templates/REFSEQ_DB/NAMESPACE
PAnnBuilder/inst/templates/REFSEQ_DB/ORGANISM.Rd
PAnnBuilder/inst/templates/REFSEQ_DB/PATH.Rd
PAnnBuilder/inst/templates/REFSEQ_DB/REFSEQ.Rd
PAnnBuilder/inst/templates/REFSEQ_DB/SEQ.Rd
PAnnBuilder/inst/templates/REFSEQ_DB/SYMBOL.Rd
PAnnBuilder/inst/templates/REFSEQ_DB/_dbconn.Rd
PAnnBuilder/inst/templates/REFSEQ_DB/zzz.R
PAnnBuilder/inst/templates/SCOP_DB
PAnnBuilder/inst/templates/SCOP_DB/Anno.Rd
PAnnBuilder/inst/templates/SCOP_DB/CHILDREN.Rd
PAnnBuilder/inst/templates/SCOP_DB/CLASSIFICATION.Rd
PAnnBuilder/inst/templates/SCOP_DB/DE.Rd
PAnnBuilder/inst/templates/SCOP_DB/MAPCOUNTS.Rd
PAnnBuilder/inst/templates/SCOP_DB/NAME.Rd
PAnnBuilder/inst/templates/SCOP_DB/NAMESPACE
PAnnBuilder/inst/templates/SCOP_DB/PARENT.Rd
PAnnBuilder/inst/templates/SCOP_DB/PDB2CF.Rd
PAnnBuilder/inst/templates/SCOP_DB/PDB2CL.Rd
PAnnBuilder/inst/templates/SCOP_DB/PDB2DM.Rd
PAnnBuilder/inst/templates/SCOP_DB/PDB2FA.Rd
PAnnBuilder/inst/templates/SCOP_DB/PDB2PX.Rd
PAnnBuilder/inst/templates/SCOP_DB/PDB2SF.Rd
PAnnBuilder/inst/templates/SCOP_DB/PDB2SP.Rd
PAnnBuilder/inst/templates/SCOP_DB/TYPE.Rd
PAnnBuilder/inst/templates/SCOP_DB/_dbconn.Rd
PAnnBuilder/inst/templates/SCOP_DB/zzz.R
PAnnBuilder/inst/templates/SP_DB
PAnnBuilder/inst/templates/SP_DB/Anno.Rd
PAnnBuilder/inst/templates/SP_DB/DE.Rd
PAnnBuilder/inst/templates/SP_DB/DISEASE.Rd
PAnnBuilder/inst/templates/SP_DB/FUNCTION.Rd
PAnnBuilder/inst/templates/SP_DB/GENEID.Rd
PAnnBuilder/inst/templates/SP_DB/GN.Rd
PAnnBuilder/inst/templates/SP_DB/GO.Rd
PAnnBuilder/inst/templates/SP_DB/INT.Rd
PAnnBuilder/inst/templates/SP_DB/INTERPRO.Rd
PAnnBuilder/inst/templates/SP_DB/KEGG.Rd
PAnnBuilder/inst/templates/SP_DB/LEN.Rd
PAnnBuilder/inst/templates/SP_DB/MAPCOUNTS.Rd
PAnnBuilder/inst/templates/SP_DB/MW.Rd
PAnnBuilder/inst/templates/SP_DB/NAMESPACE
PAnnBuilder/inst/templates/SP_DB/ORGANISM.Rd
PAnnBuilder/inst/templates/SP_DB/PATH.Rd
PAnnBuilder/inst/templates/SP_DB/PDB.Rd
PAnnBuilder/inst/templates/SP_DB/PFAM.Rd
PAnnBuilder/inst/templates/SP_DB/PMID.Rd
PAnnBuilder/inst/templates/SP_DB/PROSITE.Rd
PAnnBuilder/inst/templates/SP_DB/REFSEQ.Rd
PAnnBuilder/inst/templates/SP_DB/SEQ.Rd
PAnnBuilder/inst/templates/SP_DB/SPAC.Rd
PAnnBuilder/inst/templates/SP_DB/SPACs.Rd
PAnnBuilder/inst/templates/SP_DB/SUBCELL.Rd
PAnnBuilder/inst/templates/SP_DB/SYMBOL.Rd
PAnnBuilder/inst/templates/SP_DB/TISSUE.Rd
PAnnBuilder/inst/templates/SP_DB/UNIGENE.Rd
PAnnBuilder/inst/templates/SP_DB/_dbconn.Rd
PAnnBuilder/inst/templates/SP_DB/zzz.R
PAnnBuilder/inst/templates/SYSBODYFLUID_DB
PAnnBuilder/inst/templates/SYSBODYFLUID_DB/Anno.Rd
PAnnBuilder/inst/templates/SYSBODYFLUID_DB/BF.Rd
PAnnBuilder/inst/templates/SYSBODYFLUID_DB/BF2IPI.Rd
PAnnBuilder/inst/templates/SYSBODYFLUID_DB/MAPCOUNTS.Rd
PAnnBuilder/inst/templates/SYSBODYFLUID_DB/NAMESPACE
PAnnBuilder/inst/templates/SYSBODYFLUID_DB/ORGANISM.Rd
PAnnBuilder/inst/templates/SYSBODYFLUID_DB/PMID2BF.Rd
PAnnBuilder/inst/templates/SYSBODYFLUID_DB/PMID2ENGINE.Rd
PAnnBuilder/inst/templates/SYSBODYFLUID_DB/PMID2PLATFORM.Rd
PAnnBuilder/inst/templates/SYSBODYFLUID_DB/PMID2SAMPLE.Rd
PAnnBuilder/inst/templates/SYSBODYFLUID_DB/PMID2TITLE.Rd
PAnnBuilder/inst/templates/SYSBODYFLUID_DB/_dbconn.Rd
PAnnBuilder/inst/templates/SYSBODYFLUID_DB/zzz.R
PAnnBuilder/inst/templates/SYSPTM_DB
PAnnBuilder/inst/templates/SYSPTM_DB/Anno.Rd
PAnnBuilder/inst/templates/SYSPTM_DB/DE.Rd
PAnnBuilder/inst/templates/SYSPTM_DB/GENEID.Rd
PAnnBuilder/inst/templates/SYSPTM_DB/GN.Rd
PAnnBuilder/inst/templates/SYSPTM_DB/IDs.Rd
PAnnBuilder/inst/templates/SYSPTM_DB/MAPCOUNTS.Rd
PAnnBuilder/inst/templates/SYSPTM_DB/NAMESPACE
PAnnBuilder/inst/templates/SYSPTM_DB/ORGANISM.Rd
PAnnBuilder/inst/templates/SYSPTM_DB/PTMTYPE.Rd
PAnnBuilder/inst/templates/SYSPTM_DB/SEQ.Rd
PAnnBuilder/inst/templates/SYSPTM_DB/_dbconn.Rd
PAnnBuilder/inst/templates/SYSPTM_DB/zzz.R
PAnnBuilder/inst/templates/merge.Rd
PAnnBuilder/man
PAnnBuilder/man/GOABuilder_DB.Rd PAnnBuilder/man/HomoloGeneBuilder_DB.Rd PAnnBuilder/man/InParanoidBuilder_DB.Rd PAnnBuilder/man/PeptideAtlasBuilder_DB.Rd PAnnBuilder/man/bfBuilder_DB.Rd PAnnBuilder/man/createAnnObjs.Rd PAnnBuilder/man/crossBuilder_DB.Rd PAnnBuilder/man/dNameBuilder_DB.Rd PAnnBuilder/man/getSrcUrl.Rd PAnnBuilder/man/initClasses.Rd PAnnBuilder/man/intBuilder_DB.Rd PAnnBuilder/man/loadFromUrl.Rd PAnnBuilder/man/makeLLDB.Rd PAnnBuilder/man/pBaseBuilder_DB.Rd PAnnBuilder/man/pSeqBuilder_DB.Rd PAnnBuilder/man/processData.Rd PAnnBuilder/man/ptmBuilder_DB.Rd PAnnBuilder/man/scopBuilder_DB.Rd PAnnBuilder/man/subcellBuilder_DB.Rd PAnnBuilder/man/writeData_DB.Rd PAnnBuilder/man/writeManPage.Rd PAnnBuilder/man/zzz.Rd
PAnnBuilder/vignettes
PAnnBuilder/vignettes/PAnnBuilder.Rnw
PAnnBuilder/vignettes/PAnnBuilder.bib
PAnnBuilder/vignettes/fulltext.pdf

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