initClasses: Define Class and Object

In PAnnBuilder: Protein annotation data package builder

Description

This function define class and create new object.

Usage

pBase(srcUrl, parser, built="", fromWeb=TRUE, organism)

Arguments

srcUrl	a character string for the url where data file will be retained.
parser	a character string for the path of the parser file.
built	a character string for the release/version information of source data.
fromWeb	a boolean to indicate whether the source data will be downloaded from the web or read from a local file
organism	a character string for the name of the organism of concern. (eg: "Homo sapiens")

Details

Bioconductor "AnnBuilder" package define a class "pubRepo". Here we define a subclass of "pubRepo" called "pBase". "pBase" is used to process data from SwissProt, TREMBL, IPI, NCBI RefSeq databases.

Value

pBase return a object of "pBase" class.

Author(s)

Hong Li

PAnnBuilder documentation built on May 2, 2018, 4:07 a.m.