API for PAnnBuilder
Protein annotation data package builder
| Global functions | |
|---|---|
| .callPerl | Man page |
| .onLoad | Man page |
| .srcUrls | Man page |
| GOABuilder_DB | Man page Source code |
| HomoloGeneBuilder_DB | Man page Source code |
| InParanoidBuilder_DB | Man page Source code |
| PeptideAtlasBuilder_DB | Man page Source code |
| bfBuilder_DB | Man page Source code |
| buildMapCounts | Source code |
| callPerl | Source code |
| copyTemplates | Man page Source code |
| copyTemplates_DB | Man page Source code |
| createAnnObjs | Man page Source code |
| createAnnObjs.BACELLO | Source code |
| createAnnObjs.DBSUBLOC | Source code |
| createAnnObjs.GOA | Source code |
| createAnnObjs.HOMOLOGENE | Source code |
| createAnnObjs.INPARANOID | Source code |
| createAnnObjs.IPI | Source code |
| createAnnObjs.REFSEQ | Source code |
| createAnnObjs.SP | Source code |
| createAnnObjs.SYSBODYFLUID | Source code |
| createAnnObjs.SYSPTM | Source code |
| createEmptyDPkg | Man page Source code |
| createMAPCOUNTS | Source code |
| createSeeds | Man page Source code |
| crossBuilder_DB | Man page Source code |
| dNameBuilder_DB | Man page Source code |
| dbGetTable | Source code |
| dbschema | Man page |
| dbschema,AnnDbObj-method | Man page |
| dbschema,DBIConnection-method | Man page |
| dbschema,environment-method | Man page |
| descriptionInfo | Man page |
| fasta2list | Man page Source code |
| fileMuncher | Man page Source code |
| fileMuncher_DB | Man page Source code |
| get3DIDBuilt | Man page Source code |
| get3DIDUrl | Man page Source code |
| getALLBuilt | Man page Source code |
| getALLUrl | Man page Source code |
| getBACELLOBuilt | Man page Source code |
| getBACELLOUrl | Man page Source code |
| getBaseData | Man page Source code |
| getBaseParsers | Man page Source code |
| getDBSUBLOCBuilt | Man page Source code |
| getDBSUBLOCUrl | Man page Source code |
| getDOMINEBuilt | Man page Source code |
| getDOMINEUrl | Man page Source code |
| getGENEINTBuilt | Man page Source code |
| getGENEINTUrl | Man page Source code |
| getGOABuilt | Man page Source code |
| getGOAUrl | Man page Source code |
| getGONAMEBuilt | Source code |
| getGONAMEUrl | Source code |
| getGOUrl | Man page Source code |
| getHOMOLOGENEBuilt | Man page Source code |
| getHOMOLOGENEUrl | Man page Source code |
| getINPARANOIDBuilt | Man page Source code |
| getINPARANOIDUrl | Man page Source code |
| getINTACTBuilt | Man page Source code |
| getINTACTUrl | Man page Source code |
| getINTERPROBuilt | Man page Source code |
| getINTERPRONAMEBuilt | Source code |
| getINTERPRONAMEUrl | Source code |
| getINTERPROUrl | Man page Source code |
| getIPIBuilt | Man page Source code |
| getIPISQUrl | Man page Source code |
| getIPIUrl | Man page Source code |
| getKEGGNAMEBuilt | Source code |
| getKEGGNAMEUrl | Source code |
| getKEGGUrl | Man page |
| getMPPIBuilt | Man page Source code |
| getMPPIUrl | Man page Source code |
| getNPDUrl | Source code |
| getPEPTIDEATLASBuilt | Man page Source code |
| getPEPTIDEATLASUrl | Man page Source code |
| getPFAMBuilt | Man page Source code |
| getPFAMNAMEBuilt | Source code |
| getPFAMNAMEUrl | Source code |
| getPFAMUrl | Man page Source code |
| getPROSITENAMEBuilt | Man page Source code |
| getPROSITENAMEUrl | Man page Source code |
| getREFSEQBuilt | Man page Source code |
| getREFSEQSQUrl | Man page Source code |
| getREFSEQUrl | Man page Source code |
| getRepList | Man page Source code |
| getRepList_DB | Source code |
| getSCOPBuilt | Man page Source code |
| getSCOPUrl | Man page Source code |
| getSPBuilt | Man page Source code |
| getSPSQUrl | Source code |
| getSPUrl | Man page Source code |
| getSYSBODYFLUIDBuilt | Man page Source code |
| getSYSBODYFLUIDUrl | Man page Source code |
| getSYSPTMBuilt | Man page Source code |
| getSYSPTMUrl | Man page Source code |
| getShortSciName | Man page Source code |
| getSrcBuilt | Man page Source code |
| getSrcObjs | Man page Source code |
| getSrcSQBuilt | Man page Source code |
| getSrcSQUrl | Man page Source code |
| getSrcUrl | Man page Source code |
| getTAXNAMEBuilt | Source code |
| getTAXNAMEUrl | Source code |
| getTREMBLBuilt | Man page Source code |
| getTREMBLSQUrl | Source code |
| getTREMBLUrl | Man page Source code |
| idBlast | Man page Source code |
| index_DB | Source code |
| intBuilder_DB | Man page Source code |
| loadFromUrl | Man page Source code |
| makeLLDB | Man page Source code |
| mergeRowByKey | Man page Source code |
| onLoad | Source code |
| organism2alias | Man page Source code |
| organism2species | Man page Source code |
| organism2taxID | Man page Source code |
| pBase | Man page Source code |
| pBaseBuilder_DB | Man page Source code |
| pSeqBuilder_DB | Man page Source code |
| processData | Man page |
| ptmBuilder_DB | Man page Source code |
| scopBuilder_DB | Man page Source code |
| sourceURLs | Man page |
| speciesNorganism | Man page Source code |
| splitEntry | Man page Source code |
| srcUrls | Source code |
| subcellBuilder_DB | Man page Source code |
| taxID2organism | Man page Source code |
| taxLists | Man page |
| twoStepSplit | Man page Source code |
| unzipFile | Man page Source code |
| validateUrl | Man page Source code |
| write3DIDData_DB | Man page Source code |
| writeBACELLOData_DB | Man page Source code |
| writeDBSUBLOCData_DB | Man page Source code |
| writeDOMINEData_DB | Man page Source code |
| writeData_DB | Man page Source code |
| writeDescription | Man page Source code |
| writeDescription_DB | Man page Source code |
| writeGENEINTData_DB | Man page Source code |
| writeGOAData_DB | Man page Source code |
| writeGOName_DB | Man page Source code |
| writeHomoloGeneData_DB | Man page Source code |
| writeINTACTData_DB | Man page Source code |
| writeINTERPROName_DB | Man page Source code |
| writeIPIData_DB | Man page Source code |
| writeInParanoidData_DB | Man page Source code |
| writeInput | Man page Source code |
| writeInputBLAST | Man page Source code |
| writeInputINTERPRO | Man page Source code |
| writeInputIPI | Man page Source code |
| writeInputPFAM | Man page Source code |
| writeInputREFSEQ | Man page Source code |
| writeInputSP | Man page Source code |
| writeKEGGName_DB | Man page Source code |
| writeMPPIData_DB | Man page Source code |
| writeManAnno | Man page Source code |
| writeManAnno_DB | Man page Source code |
| writeManMerge | Man page Source code |
| writeManSQ | Man page Source code |
| writeMeta_DB | Man page Source code |
| writeName_DB | Man page Source code |
| writeOutput | Man page Source code |
| writePFAMName_DB | Man page Source code |
| writePROSITEName_DB | Source code |
| writePeptideAtlasData_DB | Man page Source code |
| writeREFSEQData_DB | Man page Source code |
| writeSCOPData_DB | Man page Source code |
| writeSPData_DB | Man page Source code |
| writeSYSBODYFLUIDData_DB | Man page Source code |
| writeSYSPTMData_DB | Man page Source code |
| writeTAXName_DB | Man page Source code |
