API for PGA
An package for identification of novel peptides by customized database derived from RNA-Seq
| Global functions | |
|---|---|
| .base_transfer | Source code |
| .extract_peptides | Source code |
| .gen_splicmatrix | Source code |
| .java.executable | Source code |
| .juc_type | Source code |
| .left_seq_extract | Source code |
| .mut_count_pro | Source code |
| .mut_freq_heatmap | Source code |
| .onAttach | Source code |
| .peptide_number_of_ntx | Source code |
| .precursor_error_hist | Source code |
| .right_seq_extract | Source code |
| .spplot | Source code |
| .translate_dna | Source code |
| .translate_dna2protein | Source code |
| .wm_charge_bar | Source code |
| .wm_evalue_hist | Source code |
| .wm_mass_hist | Source code |
| OutputNovelJun2 | Source code |
| OutputVarproseq2 | Source code |
| Outputaberrant2 | Source code |
| PrepareAnnotationEnsembl2 | Man page Source code |
| PrepareAnnotationRefseq2 | Man page Source code |
| Sys.which2 | Source code |
| Tab2Range | Source code |
| addGeneName4Ensembl | Man page |
| buildFusionProteinDB | Man page Source code |
| buildTargetDecoyDB | Source code |
| check_parser | Source code |
| createProDB4DenovoRNASeq | Man page |
| dbCreator | Man page Source code |
| easyRun | Man page Source code |
| getNovelTx | Source code |
| mybarplot | Source code |
| parserGear | Man page Source code |
| reportGear | Man page Source code |
| reportIDL | Source code |
| runTandem | Man page Source code |
