Files in PGA
An package for identification of novel peptides by customized database derived from RNA-Seq
NEWS
NAMESPACE
DESCRIPTION
build/vignette.rds
R/dbsearch.R
R/reportplot.R
R/dbCreator.R
R/report.R
R/zzz.R
R/dbtool.R
R/easyRun.R
vignettes/PGA.Rnw
vignettes/PGA.bib
man/runTandem.Rd
man/dbCreator.Rd
man/buildFusionProteinDB.Rd
man/easyRun.Rd
man/PrepareAnnotationRefseq2.Rd
man/parserGear.Rd
man/PrepareAnnotationEnsembl2.Rd
man/reportGear.Rd
man/addGeneName4Ensembl.Rd
man/createProDB4DenovoRNASeq.Rd
tests/runTests.R
inst/parser4PGA.jar
inst/CITATION
inst/doc/PGA.Rnw
inst/doc/PGA.R
inst/doc/PGA.bib
inst/doc/PGA.pdf
inst/extdata/fusion/star-fusion_example_input.tsv
inst/extdata/annotation/exon_anno.RData
inst/extdata/annotation/txdb.sqlite
inst/extdata/annotation/ids.RData
inst/extdata/annotation/proseq.RData
inst/extdata/annotation/procodingseq.RData
inst/extdata/annotation/splicemax.RData
inst/extdata/input/mascot.dat
inst/extdata/input/transcripts.gtf
inst/extdata/input/junctions.bed
inst/extdata/input/PGA.vcf
inst/extdata/input/msgfplus.mzid
inst/extdata/input/Trinity.fasta
inst/extdata/input/pga.mgf
inst/unitTests/test_check_parser.R
