Description Usage Arguments Details Value Author(s) See Also Examples

Takes a list of fitted models (lm objects) and returns coefficients in matrix format.

1 | ```
coefmat(lst,regressors)
``` |

`lst` |
list of lm objects. |

`regressors` |
character vector. Names of the coefficients to extract. |

Simple wrapper function that returns fitted coefficients.

The names of the coefficient to extract are matched in names(lst[[i]]$coef).

The column in the matrix of extracted coefficients are named by prepending "coef." to the regressor names.

`coefm` |
numeric matrix. Matrix of extracted coefficients with one row for each model in the list and one column for each targeted coefficient. |

Alexandre Kuhn [email protected]

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 | ```
## Load example expression data (variable "expression")
## and phenotype data (variable "groups")
data("example")
## Four cell population-specific reference signals
neuron_probesets <- list(c("221805_at", "221801_x_at", "221916_at"),
"201313_at", "210040_at", "205737_at", "210432_s_at")
neuron_reference <- marker(expression, neuron_probesets)
astro_probesets <- list("203540_at",c("210068_s_at","210906_x_at"),
"201667_at")
astro_reference <- marker(expression, astro_probesets)
oligo_probesets <- list(c("211836_s_at","214650_x_at"),"216617_s_at",
"207659_s_at",c("207323_s_at","209072_at"))
oligo_reference <- marker(expression, oligo_probesets)
micro_probesets <- list("204192_at", "203416_at")
micro_reference <- marker(expression, micro_probesets)
## Stepwise model selection for 2 transcripts (202429_s_at and
## 200850_s_at) and focusing on control samples (i.e. groups == 0)
lmlist <- swlm(expression[c("202429_s_at", "200850_s_at"),],
subset = which(groups == 0),
upper = formula(~neuron_reference + astro_reference +
oligo_reference + micro_reference))
coefmat(lmlist, c("(Intercept)", "neuron_reference", "astro_reference",
"oligo_reference", "micro_reference"))
``` |

PSEA documentation built on May 2, 2018, 4:03 a.m.

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