Files in PhosR

A set of methods and tools for comprehensive analysis of phosphoproteomics data

NEWS.md

_pkgdown.yml

README.md

NAMESPACE

DESCRIPTION

LICENSE

build/vignette.rds

data/phospho_L6_ratio.RData

data/phospho.cells.Ins.sample.rda

data/KinaseMotifs.rda

data/KinaseFamily.rda

data/PhosphoSitePlus.rda

data/SPSs.rda

data/phospho_liverInsTC_RUV_sample.rda

data/Pathways.rda

R/kinaseSubstratePrediction.R R/RUVs.R R/pathwayAnalysis.R R/filter.R R/Signalomes.R R/Impute.R R/data.R R/toolBox.R R/getMotifFreq.R R/plotQC.R vignettes/PhosR.Rmd man/Pathways.KEGG.Rd man/PhosphoSite.rat.Rd man/motif.rat.list.Rd man/mIntersect.Rd man/Signalomes.Rd man/RUVphospho.Rd man/PhosphoSite.human.Rd man/motif.mouse.list.Rd man/PhosphoSite.mouse.Rd man/siteAnnotate.Rd man/plotQC.Rd man/kinaseSubstrateScore.Rd man/meanAbundance.Rd man/frequencyScoring.Rd man/phospho.cells.Ins.Rd man/tImpute.Rd man/pathwayOverrepresent.Rd man/kinaseSubstratePred.Rd man/SPSs.Rd man/pathwayRankBasedEnrichment.Rd man/matANOVA.Rd man/KinaseFamily.Rd man/Pathways.reactome.Rd man/selectOverallPercent.Rd man/standardise.Rd man/medianScaling.Rd man/motif.human.list.Rd man/selectTimes.Rd man/phospho.liver.Ins.TC.ratio.RUV.Rd man/phosCollapse.Rd man/scImpute.Rd man/minmax.Rd man/ptImpute.Rd man/createFrequencyMat.Rd man/kinaseSubstrateProfile.Rd man/phospho.L6.ratio.Rd man/kinaseSubstrateHeatmap.Rd man/selectGrps.Rd tests/testthat.R tests/testthat/test-pathwayAnalysis.R tests/testthat/test-RUVs.R tests/testthat/test-plotQC.R tests/testthat/test-filter.R tests/testthat/test-impute.R

inst/graphical_abstract.png

inst/doc/PhosR.pdf inst/doc/PhosR.Rmd inst/doc/PhosR.R

PhosR documentation built on Nov. 8, 2020, 6:54 p.m.