createFrequencyMat: Create frequency matrix

Description Usage Arguments Value Examples

View source: R/getMotifFreq.R

Description

Create frequency matrix

Usage

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createFrequencyMat(substrates.seq)

Arguments

substrates.seq

A substrate sequence

Value

A frequency matrix of amino acid from substrates.seq.

Examples

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data("phospho_L6_ratio")

# We will create a frequency matrix of Tfg S198 phosphosite.
rownames(phospho.L6.ratio)[1]
substrate.seq = unlist(lapply(strsplit(rownames(phospho.L6.ratio)[1],
                                    split = "~"), function(i) i[4]))
freq.mat = createFrequencyMat(substrate.seq)

PhosR documentation built on Nov. 8, 2020, 6:54 p.m.