createFrequencyMat: Create frequency matrix
In PhosR: A set of methods and tools for comprehensive analysis of phosphoproteomics data
Description
Usage
Arguments
Value
Examples
Description
Create frequency matrix
Usage
1
createFrequencyMat(substrates.seq)
Arguments
substrates.seq
A substrate sequence
Value
A frequency matrix of amino acid from substrates.seq.
Examples
1
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data("phospho_L6_ratio")
# We will create a frequency matrix of Tfg S198 phosphosite.
rownames(phospho.L6.ratio)[1]
substrate.seq = unlist(lapply(strsplit(rownames(phospho.L6.ratio)[1],
split = "~"), function(i) i[4]))
freq.mat = createFrequencyMat(substrate.seq)
PhosR documentation built on Nov. 8, 2020, 6:54 p.m.
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Description Usage Arguments Value Examples
Description
Create frequency matrix
Usage
1 | createFrequencyMat(substrates.seq)
|
Arguments
substrates.seq |
A substrate sequence |
Value
A frequency matrix of amino acid from substrates.seq.
Examples
1 2 3 4 5 6 7 | data("phospho_L6_ratio")
# We will create a frequency matrix of Tfg S198 phosphosite.
rownames(phospho.L6.ratio)[1]
substrate.seq = unlist(lapply(strsplit(rownames(phospho.L6.ratio)[1],
split = "~"), function(i) i[4]))
freq.mat = createFrequencyMat(substrate.seq)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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