Man pages for PloGO2
Plot Gene Ontology and KEGG pathway Annotation and Abundance
| abundancePlot | Function to summarize and plot abundance information from an... |
| annotationPlot | Function to summarize and plot extracted GO or pathway... |
| compareAnnot | Function to compare annotation percentages |
| ExcelToPloGO | Function to add GO annotation to an Excel spread sheet |
| ExcelToPloPathway | Function to add KEGG pathway annotation to an Excel spread... |
| genAnnotationFiles | Function to generate a format in Wego native style from a... |
| genWegoFile | Function to generate a format in Wego native style from a... |
| getGoID | Function to map a vector of GO terms to the corresponding GO... |
| GOTermList | Function to extract a list of GO terms at level 2,3 or 4 of... |
| PloGO | Function to do steps of GO annotation and... |
| PloPathway | Function to do steps of pathway annotation and... |
| plotAbundanceBar | Function to plot abundance barplot |
| printSummary | Function to print the summary file of PloGO2 results. |
| processAnnotation | Function to process a set of annotation files given a list of... |
| processGoFile | Function to process a single file in wego-like native format |
| processPathFile | Function to process a single pathway file in wego-like native... |
| read.annot.file | Function to read an annotation file. |
| writeAnnotation | Function to print GO/pathway annotation to files |
