GOTermList: Function to extract a list of GO terms at level 2,3 or 4 of...
In PloGO2: Plot Gene Ontology and KEGG pathway Annotation and Abundance
Description
Usage
Arguments
Details
Value
Author(s)
Examples
Description
At the moment a quick and dirty way to extract all GO nodes at levels 2,
3 or 4 of the GO hierarchy.
Usage
1
GOTermList(ontology = "BP", level = 2, node = NULL)
Arguments
ontology
Either "BP", "CC" or "MF"
level
Either 2, 3 or 4
node
Null or a GO node
Details
This is a quick and dirty way to extract a list of GO terms of interest.
That can be one of the levels 2, 3 or 4 or all subnodes (children) of
a particular node if a valid GO is provided for the node parameter.
Should be rewritten.
Value
A vector of GO nodes
Author(s)
D. Pascovici
Examples
1
2
GOTermList("BP", 2)
GOTermList("CC", 2)
PloGO2 documentation built on Nov. 8, 2020, 5:40 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value Author(s) Examples
Description
At the moment a quick and dirty way to extract all GO nodes at levels 2, 3 or 4 of the GO hierarchy.
Usage
1 | GOTermList(ontology = "BP", level = 2, node = NULL)
|
Arguments
ontology |
Either "BP", "CC" or "MF" |
level |
Either 2, 3 or 4 |
node |
Null or a GO node |
Details
This is a quick and dirty way to extract a list of GO terms of interest. That can be one of the levels 2, 3 or 4 or all subnodes (children) of a particular node if a valid GO is provided for the node parameter. Should be rewritten.
Value
A vector of GO nodes
Author(s)
D. Pascovici
Examples
1 2 | GOTermList("BP", 2)
GOTermList("CC", 2)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.