genAnnotationFiles: Function to generate a format in Wego native style from a...

In PloGO2: Plot Gene Ontology and KEGG pathway Annotation and Abundance

Description

Given a Excel spreadsheet with multiple tabs, generate a Wego file for each tab using a pre-download DB file.

Usage

genAnnotationFiles(fExcelName,  colName="Uniprot", 
				DB.name = "pathwayDB.csv", folder="PWFiles",outFolder=tempdir())

Arguments

fExcelName	An excel file containing one or multiple tabs of protein IDs. For example, the proteins in each tab come from the same cluster.
colName	The column name of the protein ID.
DB.name	The database file name, in .csv format.
folder	The folder name for saving the generated files.
outFolder	The output files folder

Value

The folder path for generated annotation files.

Author(s)

J. Wu

Examples

path <- system.file("files", package = "PloGO2")

genAnnotationFiles(fExcelName = file.path(path, "ResultsWGCNA_Input4PloGO2.xlsx"),  
				colName="Uniprot", 
				DB.name = file.path(path, "pathwayDB.csv"))

PloGO2 documentation built on Nov. 8, 2020, 5:40 p.m.