API for QFeatures
Quantitative features for mass spectrometry data

Global functions
.aggregateQFeatures	Source code
.create_assay_link	Source code
.get_Hits	Source code
.infIsNA	Source code
.merge_2_by_cols	Source code
.merge_2_by_rows	Source code
.merge_by_cols	Source code
.merge_by_rows	Source code
.nNA	Source code
.nNAByAssay	Source code
.nNAByMargin	Source code
.nNAi	Source code
.row_for_filterNA	Source code
.subsetByFeature	Source code
.sweep.useAsDefault	Source code
.unique_row_names	Source code
.valid_QFeatures	Source code
.valid_QFeatures_indices	Source code
.valid_assay_links	Source code
.zeroIsNA	Source code
AllGenerics	Man page
AssayLink	Man page Source code
AssayLink-class	Man page
AssayLinks	Man page Source code
AssayLinks-class	Man page
CharacterVariableFilter	Man page
CharacterVariableFilter-class	Man page
NumericVariableFilter	Man page
NumericVariableFilter-class	Man page
QFeatures	Man page Source code
QFeatures-class	Man page
QFeatures-filtering	Man page
QFeatures-processing	Man page
VariableFilter	Man page Source code
[,AssayLink,character,ANY,ANY-method	Man page
[,AssayLink,character-method	Man page
[,AssayLinks,character-method	Man page
[,AssayLinks,list,ANY,ANY-method	Man page
[,QFeatures,ANY,ANY,ANY-method	Man page
[,QFeatures,character,ANY,ANY-method	Man page
addAssay	Man page Source code
addAssayLink	Man page Source code
addAssayLinkOneToOne	Man page Source code
aggcounts	Man page
aggcounts,SummarizedExperiment	Man page
aggcounts,SummarizedExperiment-method	Man page
aggregateFeatures	Man page
aggregateFeatures,QFeatures-method	Man page
aggregateFeatures,SummarizedExperiment-method	Man page
assayLink	Man page Source code
assayLinks	Man page Source code
class:AssayLink	Man page
class:AssayLinks	Man page
class:QFeatures	Man page
contains	Source code
dims,QFeatures-method	Man page
display	Man page Source code
expandDataFrame	Man page Source code
feat1	Man page
feat2	Man page
filterFeatures	Man page
filterFeatures,QFeatures,AnnotationFilter-method	Man page
filterFeatures,QFeatures,formula-method	Man page
filterFeaturesWithAnnotationFilter	Source code
filterFeaturesWithFormula	Source code
filterNA	Man page
filterNA,QFeatures-method	Man page
filterNA,SummarizedExperiment-method	Man page
find_assay_with_feature_name	Source code
find_assays_from	Source code
ft_na	Man page
hlpsms	Man page
impute	Man page
impute,QFeatures-method	Man page
impute,SummarizedExperiment-method	Man page
infIsNA	Man page
infIsNA,QFeatures,character-method	Man page
infIsNA,QFeatures,integer-method	Man page
infIsNA,QFeatures,missing-method	Man page
infIsNA,QFeatures,numeric-method	Man page
infIsNA,SummarizedExperiment,missing-method	Man page
invariant_col2	Source code
invariant_cols2	Source code
joinAssays	Man page Source code
logTransform	Man page
logTransform,QFeatures-method	Man page
logTransform,SummarizedExperiment-method	Man page
longFormat	Man page Source code
main_assay	Source code
mergeSElist	Source code
missing-data	Man page
nNA	Man page
nNA,QFeatures,character-method	Man page
nNA,QFeatures,integer-method	Man page
nNA,QFeatures,missing-method	Man page
nNA,QFeatures,numeric-method	Man page
nNA,SummarizedExperiment,missing-method	Man page
names<-,QFeatures,character-method	Man page
normalize	Man page
normalize,QFeatures-method	Man page
normalize,SummarizedExperiment-method	Man page
normalizeMethods	Man page
number_assays_in_se	Source code
readQFeatures	Man page Source code
readSummarizedExperiment	Man page Source code
reduceDataFrame	Man page Source code
rowData,QFeatures-method	Man page
rowDataNames	Man page Source code
scaleTransform	Man page
scaleTransform,QFeatures-method	Man page
scaleTransform,SummarizedExperiment-method	Man page
se_na2	Man page
selectRowData	Man page Source code
show,AssayLink-method	Man page
show,QFeatures-method	Man page
subsetByFeature	Man page
subsetByFeature,QFeatures,character-method	Man page
sweep	Man page
sweep,QFeatures-method	Man page
sweep,SummarizedExperiment-method	Man page
sweepSE	Source code
zeroIsNA	Man page
zeroIsNA,QFeatures,character-method	Man page
zeroIsNA,QFeatures,integer-method	Man page
zeroIsNA,QFeatures,missing-method	Man page
zeroIsNA,QFeatures,numeric-method	Man page
zeroIsNA,SummarizedExperiment,missing-method	Man page