Files in R3CPET
3CPET: Finding Co-factor Complexes in Chia-PET experiment using a Hierarchical Dirichlet Process

DESCRIPTION
README.md
NAMESPACE
inst/NEWS
inst/CITATION
inst/doc/R3CPET.R
inst/doc/R3CPET.Rnw
inst/doc/R3CPET.pdf
inst/www/d3.min.js
inst/www/graph.js
inst/www/server.R inst/www/ui.R
inst/example/HepG2_interactions.txt
inst/example/nets.RData
inst/example/HepG2_TF.txt.gz
inst/example/HepG2_centered.bed
inst/example/hlda.RData
vignettes/resultsNetwork_selection.png
vignettes/cluster_GO.png
vignettes/resultsNetworks_3ds.png
vignettes/rawData_selection.png
vignettes/resultsClusters_selection.png
vignettes/HLDA.pdf
vignettes/R3CPET.Rnw
vignettes/NetworksEnrich.pdf
vignettes/Network_Construction.png
R/PrepareData.r R/ChromMaintainers-methods.r R/HLDAResult-methods.R R/helpers-utils.R R/helper-DavidGOEnrich.R R/RcppExports.R R/AllClasses.r R/ChiapetExperimentData-methods.r R/DAVIDQuery.r R/AllGenerics.r R/WebGenerator-methods.r R/helper-GeneNameConversion.R R/NetworkCollection-methods.r
src/stirln.cpp
src/state.h
src/main.cpp
src/stirln.h
src/Makevars.win
src/utils.cpp
src/RcppExports.cpp
src/corpus.cpp
src/state.cpp
src/utils.h
src/Makevars
src/corpus.h
src/R3CPET_init.c
man/HPRD.Rd man/geneLocations.Rd man/plotRes-methods.Rd man/buildNetworks-methods.Rd man/createServer-methods.Rd man/R3CPET-package.Rd man/outputGenesPerNetworkToDir-methods.Rd man/EnsemblToHGNC.Rd man/GOEnrich-methods.Rd man/ChiapetExperimentData-class.Rd man/cluesOrSota-class.Rd man/CreateCenteredBED-methods.Rd man/clusterInteractions-methods.Rd man/getRegionsIncluster-methods.Rd man/visualizeInteractions-methods.Rd man/NetworkCollection-class.Rd man/loadPPI-methods.Rd man/Biogrid.Rd man/loadTFBS-methods.Rd man/createIndexes-methods.Rd man/InferNetworks-methods.Rd man/EntrezToHGNC.Rd man/PrepareData-methods.Rd man/HLDAResult-class.Rd man/getRegionsInNetwork-methods.Rd man/plotTrack.Rd man/loadPETs-methods.Rd man/updateResults-methods.Rd man/ChromMaintainers-class.Rd man/outputGenesPerClusterToDir-methods.Rd man/GenerateNetworks-methods.Rd man/annotateExpression-methods.Rd man/RPKMS.Rd man/visualizeCircos-methods.Rd man/chromosoms.Rd
build/vignette.rds
tests/tests.R
data/chromosoms.RData
data/geneLocations.RData
data/HPRD.RData
data/datalist
data/RPKMS.RData
data/Biogrid.RData
R3CPET documentation built on May 2, 2018, 2:47 a.m.