NetworkCollection-class: protein interaction networks maintaining DNA loops

In R3CPET: 3CPET: Finding Co-factor Complexes in Chia-PET experiment using a Hierarchical Dirichlet Process

Description

The class NetworkCollection stores information about the set of protein networks that maintains DNA interactions.

Usage

 NetworkCollection(networks, sizes,  TFCollection)

Arguments

networks	a list of list, each list contains the set of edges in each network
sizes	the sizes of each network. The should correspond to the sizes of the networks
TFCollection	the set of all the TF involved in all the interactions.

Details

The NetworkCollection contains three main information: (i) the set of edges in each network maintaining each DNA loop, (ii) the number of edges in each network and (iii) the set of TF involved in all the networks.

Value

a NetworkCollection object.

Accesors

networks

gets the list of networks

sizes

gets the vector containing the size of each network

TF

gets the list of involved TF (after filtering)

Author(s)

Mohamed Nadhir Djekidel ([e-mail])

References

Mohamed Nadhir D, Yang C et al 3CPET: Finding Co-factor Complexes in Chia-PET experiment using a Hierarchical Dirichlet Process, ....

See Also

InferNetworks, ChiapetExperimentData, buildNetworks

Examples

showClass("NetworkCollection")

R3CPET documentation built on Nov. 8, 2020, 8:05 p.m.