plotTrack: Plot interaction on a genomic track

In R3CPET: 3CPET: Finding Co-factor Complexes in Chia-PET experiment using a Hierarchical Dirichlet Process

Description

This helper method can be used to display a genomic track for a certain location that contains the chromosome and the related interactions if any.

Usage

## S4 method for signature 'ChiapetExperimentData,GRanges'
plotTrack(object, range)

Arguments

object	a ChiapetExperimentData object which contains the raw data.
range	The genomic coordinates of the location to display

Value

a ggbio::track object

Author(s)

Mohamed Nadhir Djekidel ([e-mail])

See Also

ChiapetExperimentData

Examples

    petFile <- file.path(system.file("example",package="R3CPET"),"HepG2_interactions.txt")  
    tfbsFile <- file.path(system.file("example",package="R3CPET"),"HepG2_TF.txt.gz")  

    ## Not run: 
    x <- ChiapetExperimentData(pet = petFile, tfbs=  tfbsFile, IsBed = FALSE, ppiType="HPRD", filter= TRUE) 
    gr <- GRanges("chr1",IRanges(start=100000,end=300000))
    plotTrack(x,gr)

## End(Not run)

R3CPET documentation built on Nov. 8, 2020, 8:05 p.m.