Man pages for R4RNA
An R package for RNA visualization and analysis
| alignmentStatistics | Compute statistics for a multiple sequence alignments |
| as.helix | Coerce to a Helix Data Frame |
| basepairFrequency | Calculates the frequency of each basepair |
| blankPlot | Create a blank plotting canvas |
| colourHelices | Assign colours to helices |
| expandCollapseHelix | Expand or collapse helices to and from basepairs |
| helix | Helices predicted by TRANSAT with p-values |
| logicalHelix | Logical filters of helix by type |
| logseq | Log base 10 sequence, floor and ceiling |
| plotCovariance | Plot nucleotide sequence coloured by covariance |
| plotHelix | Plots helices in arc diagram |
| R4RNA-package | An R package for RNA visualization and analysis |
| readStructure | Read secondary structure file |
| structureMismatchScore | Scores how a basepair structure fits a sequence |
| unknottedGroups | Partition basepairs into unknotted groups |
| viennaToHelix | Convert helix structures to and from other formats |
| writeHelix | Write out a helix data frame into a text file |
