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#' DAVID's website Functional Annotation Chart example files
#'
#' These datasets correspond to the reports obtained using Functional
#' Annotation Chart Reports in the Database for Annotation, Visualization and
#' Integrated Discovery (DAVID) website, using as input file the ones provided
#' for demo purposes (demoList1 or demoList2) with GOTERM_BP_ALL,
#' GOTERM_MF_ALL and GOTERM_CC_ALL categories.
#'
#' @format funChart1/2 are data.frame for demoList1/2 input ids,
#' respectively, with the following columns.
#' \describe{
#' \item{Category}{factor with the main categories under used in the present
#' analysis.}
#' \item{Term}{character with the name of the term in format id~name (if
#' available).}
#' \item{Count}{integer with the number of ids of the gene list that belong to
#' this term.}
#' \item{X.}{after converting user input gene IDs to corresponding DAVID gene
#' ID, it refers to the percentage of DAVID genes in the list assoicated with
#' particular annotation term. Since DAVID gene ID is unique per gene, it is
#' more accurate to use DAVID ID percentage to present the gene-annotation
#' association by removing any redundency in user gene list, i.e. two user IDs
#' represent same gene.}
#' \item{PValue}{numeric with the EASE Score of the term (see DAVID Help
#' page).}
#' \item{Genes}{character in comma separated style with the genes present in
#' the term.}
#' \item{List.Total, Pop.Hits, Pop.Total}{integers (in addition to Count) to
#' build the 2x2 contingency table in order to compute the EASE Score (see
#' DAVID Help page).}
#' \item{Fold.Enrichment}{numeric with the ratio of the two proportions. For
#' example, if 40/400 (i.e. 10\%) of your input genes involved in "kinase
#' activity" and the background information is 300/30000 genes (i.e. 1\%)
#' associating with "kinase activity", roughly 10\%/1\%=10 fold enrichment.}
#' \item{Bonferroni, Benjamini, FDR}{numerics with p-value adjust different
#' criterias (see p.adjust)}
#' }
#'
#' @references
#' \enumerate{
#' \item The Database for Annotation, Visualization and Integrated Discovery
#' (\url{david.abcc.ncifcrf.gov})
#' \item Huang, D. W.; Sherman, B. T.; Tan, Q.; Kir, J.; Liu, D.; Bryant, D.;
#' Guo, Y.; Stephens, R.; Baseler, M. W.; Lane, H. C.; Lempicki, R. A. DAVID
#' Bioinformatics Resources: expanded annotation database and novel algorithms
#' to better extract biology from large gene lists. Nucleic Acids Res,
#' Laboratory of Immunopathogenesis and Bioinformatics, SAIC-Frederick, Inc.,
#' National Cancer Institute at Frederick, MD 21702, USA., 2007, 35, W169-W175
#' \item DAVID Help page
#' \url{http://david.abcc.ncifcrf.gov/helps/functional_annotation.html#E3}
#' }
#'
#' @source At DAVID's website -> Start Analysis -> Demolist1/2 then go to
#' Functional Annotation Chart to obtain the appropriate reports.
#' \url{david.abcc.ncifcrf.gov}
#'
#' @author Cristobal Fresno and Elmer A Fernandez
#'
#' @docType data
#' @name funChart1
#' @rdname DAVIDdemo-functionalAnnotationChart
#' @usage data(funChart1)
#' @keywords datasets
#' @family DAVIDFunctionalAnnotationChart DataExamples
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#' @name funChart2
#' @rdname DAVIDdemo-functionalAnnotationChart
#' @usage data(funChart2)
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