RGSEA: Random Gene Set Enrichment Analysis
Version 1.10.0

Combining bootstrap aggregating and Gene set enrichment analysis (GSEA), RGSEA is a classfication algorithm with high robustness and no over-fitting problem. It performs well especially for the data generated from different exprements.

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AuthorChengcheng Ma
Bioconductor views Classification GeneSetEnrichment StatisticalMethod
Date of publicationNone
MaintainerChengcheng Ma <ccma@sibs.ac.cn>
LicenseGPL(>=3)
Version1.10.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("RGSEA")

Man pages

cmap: Data from Connectivity map build 01
e1: Data from GDS4102
e2: Data from GDS4100
RGSEAfix: Random Gene Set Enrichment Analysis with fixed number of...
RGSEA-package: Random Gene Set Enrichment Analysis (RGSEA)
RGSEApredict: Predict the class of the query data with the result of RGSEA...
RGSEAsd: Random Gene Set Enrichment Analysis features selected based...

Functions

RGSEA Man page
RGSEA-package Man page
RGSEAfix Man page Source code
RGSEApredict Man page Source code
RGSEAsd Man page Source code
cmap Man page
e1 Man page
e2 Man page

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/RGSEAfix.R
R/RGSEApredict.R
R/RGSEAsd.R
build
build/vignette.rds
data
data/cmap.rda
data/datalist
data/e1.rda
data/e2.rda
inst
inst/doc
inst/doc/RGSEA.R
inst/doc/RGSEA.Rnw
inst/doc/RGSEA.pdf
inst/unitTests
inst/unitTests/test_RGSEAfix.R
inst/unitTests/test_RGSEAsd.R
man
man/RGSEA-package.Rd
man/RGSEAfix.Rd
man/RGSEApredict.Rd
man/RGSEAsd.Rd
man/cmap.Rd
man/e1.Rd
man/e2.Rd
tests
tests/runTests.R
vignettes
vignettes/RGSEA.Rnw
RGSEA documentation built on May 20, 2017, 9:33 p.m.