RGSEA: Random Gene Set Enrichment Analysis

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Combining bootstrap aggregating and Gene set enrichment analysis (GSEA), RGSEA is a classfication algorithm with high robustness and no over-fitting problem. It performs well especially for the data generated from different exprements.

Author
Chengcheng Ma
Date of publication
None
Maintainer
Chengcheng Ma <ccma@sibs.ac.cn>
License
GPL(>=3)
Version
1.8.0

View on Bioconductor

Man pages

cmap
Data from Connectivity map build 01
e1
Data from GDS4102
e2
Data from GDS4100
RGSEAfix
Random Gene Set Enrichment Analysis with fixed number of...
RGSEA-package
Random Gene Set Enrichment Analysis (RGSEA)
RGSEApredict
Predict the class of the query data with the result of RGSEA...
RGSEAsd
Random Gene Set Enrichment Analysis features selected based...

Files in this package

RGSEA/DESCRIPTION
RGSEA/NAMESPACE
RGSEA/NEWS
RGSEA/R
RGSEA/R/RGSEAfix.R
RGSEA/R/RGSEApredict.R
RGSEA/R/RGSEAsd.R
RGSEA/build
RGSEA/build/vignette.rds
RGSEA/data
RGSEA/data/cmap.rda
RGSEA/data/datalist
RGSEA/data/e1.rda
RGSEA/data/e2.rda
RGSEA/inst
RGSEA/inst/doc
RGSEA/inst/doc/RGSEA.R
RGSEA/inst/doc/RGSEA.Rnw
RGSEA/inst/doc/RGSEA.pdf
RGSEA/inst/unitTests
RGSEA/inst/unitTests/test_RGSEAfix.R
RGSEA/inst/unitTests/test_RGSEAsd.R
RGSEA/man
RGSEA/man/RGSEA-package.Rd
RGSEA/man/RGSEAfix.Rd
RGSEA/man/RGSEApredict.Rd
RGSEA/man/RGSEAsd.Rd
RGSEA/man/cmap.Rd
RGSEA/man/e1.Rd
RGSEA/man/e2.Rd
RGSEA/tests
RGSEA/tests/runTests.R
RGSEA/vignettes
RGSEA/vignettes/RGSEA.Rnw