makeData: Make data files for RIPAT.
In RIPAT: Retroviral Integration Pattern Analysis Tool (RIPAT)
Description
Usage
Arguments
Value
Examples
Description
Download datafiles for running RIPAT.
Usage
1
makeData(organism = 'GRCh37', dataType = 'gene')
Arguments
organism
a single character. Two versions of organism such as GRCh37, GRCh38 (Human). Default is 'GRCh37'.
dataType
a single character. Data type what user needs (gene, cpg, repeat and variant). Default is 'gene'.
Value
Database files are saved in the extdata directory of RIPAT.
Examples
1
makeData(organism = 'GRCh37')
RIPAT documentation built on Nov. 8, 2020, 6:24 p.m.
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Description Usage Arguments Value Examples
Description
Download datafiles for running RIPAT.
Usage
1 | makeData(organism = 'GRCh37', dataType = 'gene')
|
Arguments
organism |
a single character. Two versions of organism such as GRCh37, GRCh38 (Human). Default is 'GRCh37'. |
dataType |
a single character. Data type what user needs (gene, cpg, repeat and variant). Default is 'gene'. |
Value
Database files are saved in the extdata directory of RIPAT.
Examples
1 | makeData(organism = 'GRCh37')
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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