Description Usage Arguments Value Examples
Make an input object for annotation functions.
1 2 3 |
inFile |
a string vector. The path of a local alignment result file. File do not include any header and comment. |
mapTool |
a character vector. Function serves two types of file such as outputs from BLAST and BLAT. Default is 'blast'. If you want to use BLAT result, use 'blat'. |
vectorPos |
a character vector. Sets the position of vector on sequences. Default value is 'front'. If the vector is located at the behind of sequence, you can change it to 'behind'. |
outPath |
a string vector. Directory path of tab-deliminated hit files generated by this function. |
outFileName |
a character vector. Attached character to the result file name. |
Return two types of outputs. Text file and R object. Available hit data from input is written in text file and generated as a list of GenomicRange(GR) format object.
1 | blast_obj = makeInputObj(inFile = paste0(.libPaths()[1], '/RIPAT/scripts/A5_15856M_BLASTn.txt'))
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