Description Usage Arguments Value Author(s) Examples
View source: R/cmd_batch_rnaseq_quality_assessment.R
Assess the quality of '.fastq.gz' files for RNA-Seq workflow in R shell.
This step is optional in the whole RNA-Seq workflow.
This function reports the quality assessment result in packages
systemPipeR
For systemPipeR
,
'RNASeq_results/QA_results/Rqc/systemPipeR/fastqReport.pdf'
will be created.
If you want to assess the quality of '.fastq.gz'
files for the following RNA-Seq workflow in background,
please see RNASeqQualityAssessment_CMD()
function.
1 2 | RNASeqQualityAssessment(RNASeqRParam, which.trigger = "OUTSIDE",
INSIDE.path.prefix = NA, check.s4.print = TRUE)
|
RNASeqRParam |
S4 object instance of experiment-related parameters |
which.trigger |
Default value is |
INSIDE.path.prefix |
Default value is |
check.s4.print |
Default |
None
Kuan-Hao Chao
1 2 3 4 | data(yeast)
## Not run:
RNASeqQualityAssessment(RNASeqRParam = yeast)
## End(Not run)
|
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