API for RNASeqR
RNASeqR: an R package for automated two-group RNA-Seq analysis workflow

Global functions
.onAttach Source code
AlignmentPlot Source code
All_Steps_Interface Man page Source code
All_Steps_Interface_CMD Man page Source code
BallgownAnalysis Source code
BallgownTranscriptRelatedPlot Source code
Check2to3 Source code
CheckCaseControlGroup Source code
CheckGffcompare Source code
CheckGoLevel Source code
CheckHisat2 Source code
CheckInputDirFiles Source code
CheckInputDirFiles_Bam Source code
CheckInputDirFiles_Sam Source code
CheckInputParamNa Source code
CheckInputPrefixPath Source code
CheckOperatingSystem Source code
CheckPhenodata Source code
CheckPhenodata_Bam Source code
CheckPhenodata_Sam Source code
CheckPrefixPath Source code
CheckPython Source code
CheckS4Object_All Source code
CheckSTAR Source code
CheckSamtools Source code
CheckStringTie Source code
CheckToolAll Man page Source code
CheckTool_Sam_Bam Source code
CopyInputDir Source code
CopyInputDir_Bam Source code
CopyInputDir_Sam Source code
DEGeneList Source code
DESeq2RawCountAnalysis Source code
ExportPath Source code
FrequencyPlot Source code
GOAnalysis Source code
GetKEGGUrl Source code
GffcompareRefSample Source code
Hisat2AlignmentDefault Source code
InstallAll Source code
InstallGffcompareBinary Source code
InstallHisat2Bianry Source code
InstallStarBianry Source code
InstallStringTieBinary Source code
KEGGAnalysis Source code
KEGGDEGeneList Source code
MkdirAll Source code
MkdirGeneDir Source code
MkdirRNASeq_bin Source code
MkdirRNASeq_results Source code
MkdirRscript_Rscript_out Source code
ParseResultCSV Source code
PostCheckRNASeqQualityAssessment Source code
PostRNASeqDifferentialAnalysis Source code
PostRNASeqEnvironmentSet Source code
PostRNASeqEnvironmentSet_Bam Source code
PostRNASeqEnvironmentSet_Sam Source code
PostRNASeqGoKegg Source code
PostRNASeqReadProcess Source code
PostRNASeqReadProcess_Bam Source code
PostRNASeqReadProcess_Sam Source code
PreCheckRNASeqQualityAssessment Source code
PreDECountTable Source code
PreRNASeqDifferentialAnalysis Source code
PreRNASeqEnvironmentSet Source code
PreRNASeqGoKegg Source code
PreRNASeqReadProcess Source code
PreRNASeqReadProcess_Bam Source code
PreRNASeqReadProcess_Sam Source code
ProgressGenesFiles Source code
RNASeqDifferentialAnalysis Man page Source code
RNASeqDifferentialAnalysis_CMD Man page Source code
RNASeqEnvironmentSet Man page Source code
RNASeqEnvironmentSet_CMD Man page Source code
RNASeqGoKegg Man page Source code
RNASeqGoKegg_CMD Man page Source code
RNASeqQualityAssessment Man page Source code
RNASeqQualityAssessment_CMD Man page Source code
RNASeqR Man page
RNASeqRParam Man page Source code
RNASeqRParam-class Man page
RNASeqRParam-constructor Man page
RNASeqRParam_Bam Man page Source code
RNASeqRParam_Bam-class Man page
RNASeqRParam_Bam-constructor Man page
RNASeqRParam_Sam Man page Source code
RNASeqRParam_Sam-class Man page
RNASeqRParam_Sam-constructor Man page
RNASeqReadProcess Man page Source code
RNASeqReadProcess_CMD Man page Source code
RSamtoolsToBam Source code
RawCountGeneNameChange Source code
RawCountWrap Source code
RawReadCountAvailability Source code
STARAlignmentDefault Source code
StringTieAssemble Source code
StringTieMergeTrans Source code
StringTieToBallgown Source code
Update_Fastq_gz Man page Source code
edgeRRawCountAnalysis Source code
getURL Source code
phenoDataWrap Source code
yeast Man page
RNASeqR documentation built on Nov. 8, 2020, 7:49 p.m.