Maximum Likelihood Decay Modeling of RNA Degradation Data

a_high | calculates bounds for modeled parameters |

aic | Akaike information criterion (with correction) |

cols | Indexes column names with multiple patterns (i.e., multigrep) |

comb_cv | combined adjusted coefficient of variation |

const_decay | exponential decay functions |

constraint_fun_list_maker | contraint function list maker |

decay_data | Normalized RNA abundance RNA decay timecourse |

decay_plot | decay_plot() function |

fit_var | sigma^2 estimation |

groupings | Combinatorial groups matrix generator |

group_map | model color map |

log_lik | log likelihood |

models | Example double exponential decay modeling results |

mod_optimization | model optimization for fitting exponential decay models to... |

n_par | number of Parameters function |

plain_theme | a custom ggplot2 theme |

results | Example double exponential decay modeling results |

RPMs | RNA abundance reads per million over RNA decay timecourse |

sse_null_decaying_decay | sum of the squared errors for null models |

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