results: Example double exponential decay modeling results

In RNAdecay: Maximum Likelihood Decay Modeling of RNA Degradation Data

Description

Example results from maximum likelihood modeling of double exponential RNA decay of 118 genes. Results include parameter estimates, selected model, and alpha and beta groupings.

Usage

results

Format

a data frame with 18 columns and 118 rows.

alpha_XXX

decay rate estimate of genotype XXX, in per time (min^-1)

beta_XXX

decay of decay rate estimate of genotype XXX, in per time (min^-1)

sigma2

variance estimate

model

selected model number

alpha_grp

model alpha grouping number

beta_grp

model beta grouping number

alpha_subgroup

model alpha subgroup number

alphaPattern

model alpha subgroup pattern; i.e. order of genotypes of increaseing decay rate

betaPattern

model beta subgroup pattern; i.e. order of genotypes of increaseing decay of decay rate

rA_XXX

relative alpha value of genotype XXX compared to WT

nEqMods

number of models that were not different than the selected model based on a AICc difference <2

nEqAgp

number of alpha groups represented in nEqMods

Source

Sorenson et al. (2017) Submitted; https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE86361

RNAdecay documentation built on Nov. 8, 2020, 5:52 p.m.