Man pages for RNAmodR
Detection of post-transcriptional modifications in high throughput sequencing data
| aggregate | Aggregate data per positions |
| compareByCoord | Comparison of Samples |
| CoverageSequenceData-class | CoverageSequenceData |
| EndSequenceData-class | End5SequenceData/End3SequenceData/EndSequenceData |
| Modifier-class | The Modifier class |
| Modifier-functions | Modifier/ModifierSet functions |
| ModifierSet-class | The ModifierSet class |
| modify | Searching for modifications in 'SequenceData' |
| ModInosine | ModInosine |
| ModInosine-functions | Functions for ModInosine |
| ModInosine-internals | ModInosine internal functions |
| NormEndSequenceData-class | NormEnd5SequenceData/NormEnd3SequenceData |
| PileupSequenceData-class | PileupSequenceData |
| plotData | Visualizing data data from a 'SequenceData',... |
| plotROC | ROCR functions for 'Modifier' and 'ModifierSet' objects |
| ProtectedEndSequenceData-class | ProtectedEndSequenceData |
| RNAmodR | RNAmodR |
| RNAmodR-datasets | Example data in the RNAmodR package |
| RNAmodR-development | RNAmodR developments functions |
| RNAmodR-internals | RNAmodR internal functions |
| SequenceData-class | The SequenceData class |
| SequenceDataFrame-class | The SequenceDataFrame class |
| SequenceData-functions | SequenceData/SequenceDataSet/SequenceDataList/SequenceDataFrame... |
| SequenceDataList-class | The SequenceDataList class |
| SequenceDataSet-class | The SequenceDataSet class |
| SequenceModDNAStringSetTrack-class | ModDNASequenceTrack |
| SequenceModRNAStringSetTrack-class | ModRNASequenceTrack |
| settings | Settings for 'Modifier' objects |
| stats | Retrieving information about used reads in RNAmodR |
| subsetByCoord | Subsetting data from a 'SequenceData', 'SequenceDataSet',... |
