RNAmodR-datasets: Example data in the RNAmodR package

In RNAmodR: Detection of post-transcriptional modifications in high throughput sequencing data

Description

The following datasets are contained in the RNAmodR package. They are used in the man page examples.

Usage

data(msi)

data(sds)

data(sdl)

data(psd)

data(e5sd)

data(e3sd)

data(esd)

data(csd)

data(ne3sd)

data(ne5sd)

data(pesd)

Format

• msi a ModSetInosine instance

• sds a SequenceDataSet instance

• sdl a SequenceDataList instance

• psd a PileupSequenceData instance

• e5sd a End5SequenceData instance

• e3sd a End3SequenceData instance

• esd a EndSequenceData instance

• csd a CoverageSequenceData instance

• ne3sd a NormEnd3SequenceData instance

• ne5sd a NormEnd5SequenceData instance

• pesd a ProtectedEndSequenceData instance

An object of class SequenceDataSet of length 2.

An object of class SequenceDataList of length 3.

An object of class PileupSequenceData of dimension 100 x 101 x 15 x 15.

An object of class End5SequenceData of dimension 100 x 101 x 3 x 3.

An object of class End3SequenceData of dimension 100 x 101 x 3 x 3.

An object of class EndSequenceData of dimension 100 x 101 x 3 x 3.

An object of class CoverageSequenceData of dimension 100 x 101 x 3 x 3.

An object of class NormEnd3SequenceData of dimension 100 x 101 x 9 x 9.

An object of class NormEnd5SequenceData of dimension 100 x 101 x 9 x 9.

An object of class ProtectedEndSequenceData of dimension 100 x 101 x 3 x 3.

RNAmodR documentation built on Dec. 15, 2020, 2 a.m.