SequenceDataSet-class: The SequenceDataSet class

In RNAmodR: Detection of post-transcriptional modifications in high throughput sequencing data

Description

The SequenceDataSet class is used to hold SequenceData objects as its elements. It is derived from the List class.

The SequenceDataSet is used to hold different data types from the of same aligned reads. The same dataset can be used to generate multiple sets of data types. Bam files, annotation and sequence data must be the same for all elements.

Usage

SequenceDataSet(...)

Arguments

...	The elements to be included in the SequenceDataSet.

Value

a SequenceDataSet

Examples

data(psd,package="RNAmodR")
data(e5sd,package="RNAmodR")
sdl <- SequenceDataSet(psd,e5sd)

RNAmodR documentation built on Dec. 15, 2020, 2 a.m.