RSVSim: RSVSim: an R/Bioconductor package for the simulation of structural variations

RSVSim is a package for the simulation of deletions, insertions, inversion, tandem-duplications and translocations of various sizes in any genome available as FASTA-file or BSgenome data package. SV breakpoints can be placed uniformly accross the whole genome, with a bias towards repeat regions and regions of high homology (for hg19) or at user-supplied coordinates.

AuthorChristoph Bartenhagen
Date of publicationNone
MaintainerChristoph Bartenhagen <christoph.bartenhagen@uni-muenster.de>
LicenseLGPL-3
Version1.14.0

View on Bioconductor

Functions

compareSV Man page
compareSV,character,character-method Man page
compareSV,character,data.frame-method Man page
compareSV,data.frame,data.frame-method Man page
estimateSVSizes Man page
estimateSVSizes,numeric,missing,ANY,ANY,character-method Man page
estimateSVSizes,numeric,missing,ANY,ANY,missing-method Man page
estimateSVSizes,numeric,numeric,ANY,ANY,missing-method Man page
segDups Man page
simulateSV Man page
simulateSV,ANY Man page
simulateSV,ANY-method Man page
weightsMechanisms Man page
weightsRepeats Man page

Files

RSVSim/DESCRIPTION
RSVSim/NAMESPACE
RSVSim/R
RSVSim/R/AllGenerics.R RSVSim/R/Main.R RSVSim/R/Misc.R RSVSim/R/Rearrangement.R RSVSim/R/Simulation.R
RSVSim/build
RSVSim/build/vignette.rds
RSVSim/data
RSVSim/data/segmentalDuplications.RData
RSVSim/data/weightsMechanisms.RData
RSVSim/data/weightsRepeats.RData
RSVSim/inst
RSVSim/inst/doc
RSVSim/inst/doc/vignette.R
RSVSim/inst/doc/vignette.Rnw
RSVSim/inst/doc/vignette.pdf
RSVSim/man
RSVSim/man/compareSVs.Rd RSVSim/man/estimateSVSizes.Rd RSVSim/man/segmentalDuplications.Rd RSVSim/man/simulateSV.Rd RSVSim/man/weightsMechanisms.Rd RSVSim/man/weightsRepeats.Rd
RSVSim/vignettes
RSVSim/vignettes/vignette.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.