segmentalDuplications: Segmental duplications

In RSVSim: RSVSim: an R/Bioconductor package for the simulation of structural variations

Description

A list with coordinates of segmental duplications detected by RepeatMasker. It is loaded automatically when the repeat bias feature has been turned on (repeatBias=TRUE in function simulateSV). (But this dataset is intended for internal use; no need to handle it manually.)

Usage

  data("segmentalDuplications")

Format

Formal class 'GRanges'

Source

Downloaded from the UCSC Browser's RepeatMasker track. Meyer et al., The UCSC Genome Browser database: extensions and updates 2013, 2013, Nucleic Acids Res, 41(Database issue), 64-69. Smit et al., RepeatMasker Open-3.0., 1996-2010, <http://www.repeatmasker.org>.

Examples

  data("segmentalDuplications")
  segDups

RSVSim documentation built on Nov. 8, 2020, 5:35 p.m.