MBR-class: MBR objects
In RTNduals: Analysis of co-regulation and inference of 'dual regulons'

Description Details Slots Constructor

MBR: an S4 class for co-regulation analysis and inference of 'dual regulons'.

The MBR class is a container for results from the MBR methods. The class slots are used to store information of different transcriptional networks, regulator annotation, infered 'dual regulons' and parameters used in the analysis. All the information is stored in nine slots.

TNI: a 'TNI' object created by the RTN package.
regulatoryElements: regulatory elements listed in the TNI.
dualRegulons: all possible 'duals regulons' computed by mbrAssociation
results: a list, results from the MBR methods.
para: a list, parameters used in the MBR methods.
summary: a list, summary for 'para' and 'results'.
status: a character vector specifying the status of the MBR object based on the available methods.